MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:63.3 nTPM
HPA:63.3 nTPM
GTEx:41.8 nTPM
FANTOM5:26.2 Scaled Tags Per Million
Pig:46.2 nTPM
Mouse:37.3 nTPM
Allen mouse:4.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 63.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 61.8
2586 Male, age 75, left hemisphere 82.3
2828 Female, age 72, unknown 65.4
2666 Male, age 74, left hemisphere 65.3
2019 Male, age 18, unknown 64.2
1827 Male, age 72, unknown 61.6
2219 Male, age 76, both hemispheres 56.8
2411 Female, age 72, unknown 56.5
1833 Male, age 53, unknown 56.2
1830 Male, age 51, unknown 55.7
1870 Female, age 42, unknown 54.5
Dorsal raphe nucleus
nTPM: 54.5
2047 Male, age 72, unknown 56.6
1828 Male, age 53, unknown 56.3
2750 Male, age 76, both hemispheres 53.5
2298 Female, age 72, unknown 53.0
2016 Female, age 72, unknown 52.9
Inferior colliculus
nTPM: 62.2
1848 Female, age 42, unknown 63.3
1890 Male, age 53, unknown 63.2
2097 Female, age 72, unknown 62.1
2849 Male, age 72, unknown 60.3
Median raphe nucleus
nTPM: 53.0
2220 Male, age 76, midline 53.0
Pedunculopontine tegmental nucleus
nTPM: 57.2
1921 Female, age 85, both hemispheres 57.3
2338 Male, age 61, both hemispheres 57.3
2334 Male, age 80, both hemispheres 56.9
Periaquaductal grey, anterior
nTPM: 61.5
2502 Female, age 75, unknown 65.1
1795 Male, age 51, unknown 61.3
1947 Male, age 18, unknown 58.2
Periaquaductal grey, dorsal
nTPM: 55.2
2464 Female, age 72, unknown 59.8
1840 Male, age 53, unknown 56.8
1831 Male, age 72, unknown 54.2
2850 Male, age 76, both hemispheres 50.1
Periaquaductal grey, lateral
nTPM: 51.8
2053 Male, age 18, unknown 54.5
2140 Male, age 76, both hemispheres 53.4
2272 Male, age 74, both hemispheres 47.6
Pretectal area
nTPM: 61.7
1816 Male, age 51, unknown 73.9
2007 Male, age 72, unknown 71.8
1944 Female, age 72, unknown 71.0
1817 Female, age 42, unknown 70.6
1815 Male, age 53, unknown 63.9
2407 Male, age 75, both hemispheres 59.8
2825 Male, age 18, unknown 56.3
2667 Female, age 75, unknown 56.2
2316 Male, age 76, right hemisphere 55.9
2224 Female, age 72, unknown 51.7
2273 Male, age 74, both hemispheres 47.5
Red nucleus
nTPM: 58.7
2584 Male, age 75, left hemisphere 66.2
2785 Male, age 18, unknown 64.3
2588 Male, age 74, left hemisphere 62.8
2227 Male, age 72, unknown 59.4
2769 Male, age 72, unknown 59.1
2503 Female, age 72, unknown 58.0
1821 Female, age 72, unknown 56.4
1865 Male, age 51, unknown 56.4
1954 Female, age 42, unknown 56.2
1904 Male, age 53, unknown 55.5
2725 Female, age 75, unknown 55.1
2823 Male, age 76, right hemisphere 54.6
Substantia nigra
nTPM: 59.7
2665 Male, age 74, both hemispheres 67.0
1889 Female, age 72, unknown 65.0
2583 Male, age 75, right hemisphere 64.2
1916 Female, age 42, unknown 62.8
1851 Male, age 51, unknown 59.3
1941 Male, age 53, unknown 58.8
2590 Female, age 75, unknown 57.4
2699 Male, age 18, unknown 55.0
2409 Female, age 72, unknown 53.9
2241 Male, age 72, unknown 53.1
Superior colliculus
nTPM: 63.3
2664 Male, age 75, both hemispheres 71.5
2668 Female, age 75, unknown 71.3
2087 Female, age 72, unknown 69.4
1796 Male, age 53, unknown 66.6
2261 Male, age 18, unknown 63.4
1895 Male, age 76, right hemisphere 60.0
1839 Male, age 51, unknown 59.5
1995 Male, age 72, unknown 58.4
1913 Female, age 42, unknown 56.8
2587 Male, age 74, left hemisphere 56.2
Ventral tegmental area
nTPM: 56.4
2410 Female, age 72, unknown 58.9
2223 Female, age 72, unknown 58.0
1915 Female, age 42, unknown 56.6
1942 Male, age 51, unknown 56.6
2021 Male, age 53, unknown 54.1
2218 Male, age 76, both hemispheres 54.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 41.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 41.8
Samples: 139

Max nTPM: 67.2
Min nTPM: 20.5
Std nTPM: 7.3
Median nTPM: 42.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 67.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 55.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 55.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 55.0
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 54.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 54.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 54.0
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 53.2
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 52.7
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 52.2
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 52.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.2
FF:10158-103A5 76 years, female 26.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 46.2
Pig sample Sample description nTPM
Midbrain
nTPM: 46.3
Samples: 4

Max nTPM: 51.4
Min nTPM: 34.3
Sample A Female 51.4
Sample B Female 34.3
Sample C Male 50.7
Sample D Male 48.6
Periaqueductal gray
nTPM: 32.0
Samples: 3

Max nTPM: 34.9
Min nTPM: 28.9
Sample B Female 32.3
Sample C Male 34.9
Sample D Male 28.9
Substantia nigra
nTPM: 37.1
Samples: 4

Max nTPM: 40.6
Min nTPM: 30.8
Sample A Female 40.5
Sample B Female 30.8
Sample C Male 40.6
Sample D Male 36.3
Superior colliculi
nTPM: 45.0
Samples: 4

Max nTPM: 50.8
Min nTPM: 34.3
Sample A Female 49.1
Sample B Female 34.3
Sample C Male 45.6
Sample D Male 50.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 37.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 37.3
Samples: 4

Max nTPM: 44.3
Min nTPM: 32.0
Sample A Male 44.3
Sample B Male 35.3
Sample C Female 32.0
Sample D Female 37.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.2
70300869 Antisense, RP_050607_02_E08, Mouse strain C57BL/6J (56 days, male) 4.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.