BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:104.4 nTPM
HPA:104.4 nTPM
GTEx:113.5 nTPM
FANTOM5:42.6 Scaled Tags Per Million
Pig:14.1 nTPM
Mouse:85.3 nTPM
Allen mouse:4.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 104.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 98.1
1857 Female, age 85, left hemisphere 101.9
2481 Female, age 94, left hemisphere 101.5
2290 Female, age 72, unknown 100.5
1854 Male, age 80, left hemisphere 99.0
1781 Male, age 74, unknown 98.5
2288 Male, age 75, left hemisphere 96.3
2846 Female, age 79, unknown 95.4
2289 Male, age 61, right hemisphere 91.7
Claustrum
nTPM: 99.7
2198 Male, age 80, both hemispheres 105.6
2645 Female, age 72, unknown 102.8
2491 Male, age 75, both hemispheres 101.3
2568 Male, age 61, both hemispheres 101.1
2284 Female, age 91, both hemispheres 100.2
2392 Female, age 94, both hemispheres 98.6
1956 Male, age 74, unknown 96.7
2196 Female, age 79, unknown 96.1
2292 Female, age 85, both hemispheres 94.7
Globus pallidus, externus
nTPM: 98.4
1996 Male, age 80, right hemisphere 100.6
2772 Female, age 79, unknown 99.7
2646 Male, age 61, right hemisphere 99.6
2395 Male, age 75, both hemispheres 99.1
2567 Female, age 72, unknown 93.0
Globus pallidus, internus
nTPM: 95.8
2483 Female, age 94, right hemisphere 109.8
2287 Male, age 75, right hemisphere 99.4
2037 Male, age 80, right hemisphere 95.0
1818 Male, age 74, unknown 93.3
2778 Female, age 91, both hemispheres 92.8
2566 Female, age 72, unknown 90.9
2111 Female, age 85, right hemisphere 89.7
Nucleus accumbens
nTPM: 98.9
1806 Female, age 85, left hemisphere 103.8
2286 Male, age 75, left hemisphere 101.5
1783 Male, age 74, unknown 101.4
1856 Female, age 91, right hemisphere 101.0
2824 Male, age 61, right hemisphere 99.2
2732 Male, age 80, right hemisphere 96.9
2698 Female, age 72, unknown 94.2
2391 Female, age 94, left hemisphere 93.2
Nucleus basalis of Meynert
nTPM: 96.0
2569 Male, age 61, both hemispheres 103.6
2484 Female, age 94, left hemisphere 95.5
2393 Male, age 80, right hemisphere 95.1
2821 Male, age 75, both hemispheres 89.8
Nucleus of the diagonal band
nTPM: 104.4
2775 Male, age 80, right hemisphere 108.1
2029 Male, age 61, right hemisphere 106.6
1812 Female, age 91, both hemispheres 105.9
1979 Male, age 74, unknown 101.5
2195 Female, age 85, both hemispheres 99.8
Olfactory tubercle
nTPM: 103.5
1846 Male, age 80, right hemisphere 107.1
1998 Female, age 91, both hemispheres 105.8
2487 Female, age 94, left hemisphere 101.9
2856 Male, age 75, right hemisphere 99.2
Putamen
nTPM: 95.8
2647 Male, age 75, left hemisphere 100.9
2466 Female, age 79, unknown 98.3
2482 Female, age 94, left hemisphere 97.7
1937 Female, age 91, right hemisphere 97.3
1838 Male, age 80, right hemisphere 96.7
1829 Male, age 74, unknown 90.0
2489 Female, age 72, unknown 89.9
Septal nuclei
nTPM: 101.4
1960 Male, age 74, unknown 109.4
2031 Female, age 72, unknown 107.6
2059 Female, age 85, both hemispheres 100.8
2009 Female, age 91, both hemispheres 100.4
2394 Male, age 61, left hemisphere 99.3
2199 Male, age 80, right hemisphere 97.0
2629 Female, age 94, right hemisphere 95.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 113.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 98.4
Samples: 246

Max nTPM: 164.8
Min nTPM: 63.7
Std nTPM: 18.5
Median nTPM: 95.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 164.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 164.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 155.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 154.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 152.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 152.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 142.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 139.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 136.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 136.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 134.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 113.5
Samples: 246

Max nTPM: 213.7
Min nTPM: 60.6
Std nTPM: 21.6
Median nTPM: 112.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 213.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 200.1
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 190.1
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 168.7
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 167.5
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 166.5
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 160.2
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 159.8
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 158.9
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 157.6
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 154.4
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Brain - Putamen (basal ganglia)
Average nTPM: 102.8
Samples: 205

Max nTPM: 172.9
Min nTPM: 55.5
Std nTPM: 18.6
Median nTPM: 101.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 172.9
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 161.7
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 157.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 147.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 146.3
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 141.1
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 138.0
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 137.9
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 137.7
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 136.3
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 135.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 33.7
FF:10164-103B2 76 years, female 33.7
Globus pallidus
Scaled Tags Per Million: 19.8
FF:10175-103C4 60 years, female 26.8
FF:10161-103A8 76 years, female 12.8
Nucleus accumbens
Scaled Tags Per Million: 36.6
FF:10037-101F1 23-56 years, mixed 36.6
Putamen
Scaled Tags Per Million: 42.6
FF:10176-103C5 60 years, female 42.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 14.1
Pig sample Sample description nTPM
Caudate
nTPM: 13.6
Samples: 4

Max nTPM: 16.2
Min nTPM: 11.1
Sample A Female 11.1
Sample B Female 15.1
Sample C Male 16.2
Sample D Male 11.8
Putamen
nTPM: 13.6
Samples: 4

Max nTPM: 20.2
Min nTPM: 8.5
Sample A Female 8.5
Sample B Female 12.9
Sample C Male 20.2
Sample D Male 12.7
Septum
nTPM: 14.1
Samples: 4

Max nTPM: 18.0
Min nTPM: 10.2
Sample A Female 13.5
Sample B Female 14.8
Sample C Male 18.0
Sample D Male 10.2
Ventral pallidum
nTPM: 13.5
Samples: 4

Max nTPM: 17.4
Min nTPM: 9.6
Sample A Female 10.5
Sample B Female 16.6
Sample C Male 17.4
Sample D Male 9.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 85.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 52.2
Samples: 4

Max nTPM: 57.2
Min nTPM: 45.5
Sample A Male 53.4
Sample B Male 57.2
Sample C Female 45.5
Sample D Female 52.6
Septum
nTPM: 85.3
Samples: 4

Max nTPM: 88.1
Min nTPM: 80.4
Sample A Male 88.1
Sample B Male 86.8
Sample C Female 85.7
Sample D Female 80.4
Ventral forebrain
nTPM: 73.0
Samples: 4

Max nTPM: 82.7
Min nTPM: 66.7
Sample A Male 70.5
Sample B Male 72.0
Sample C Female 82.7
Sample D Female 66.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.3
77910727 Antisense, RP_070208_04_F08, Mouse strain C57BL/6J (56 days, male) 4.7
583862 Antisense, RP_040831_01_C01, Mouse strain C57BL/6J (56 days, male) 1.9
Pallidum
Expression energy: 4.0
77910727 Antisense, RP_070208_04_F08, Mouse strain C57BL/6J (56 days, male) 4.9
583862 Antisense, RP_040831_01_C01, Mouse strain C57BL/6J (56 days, male) 3.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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