MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:111.5 nTPM
HPA:111.5 nTPM
GTEx:83.4 nTPM
FANTOM5:16.7 Scaled Tags Per Million
Pig:16.0 nTPM
Mouse:63.6 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 111.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 98.8
2586 Male, age 75, left hemisphere 116.2
2666 Male, age 74, left hemisphere 103.4
1827 Male, age 72, unknown 101.4
2828 Female, age 72, unknown 101.2
2411 Female, age 72, unknown 99.5
1870 Female, age 42, unknown 97.3
1833 Male, age 53, unknown 93.2
1830 Male, age 51, unknown 92.6
2019 Male, age 18, unknown 92.3
2219 Male, age 76, both hemispheres 90.4
Dorsal raphe nucleus
nTPM: 102.2
2298 Female, age 72, unknown 110.4
2047 Male, age 72, unknown 106.5
1828 Male, age 53, unknown 101.2
2016 Female, age 72, unknown 98.9
2750 Male, age 76, both hemispheres 93.9
Inferior colliculus
nTPM: 96.4
2097 Female, age 72, unknown 100.2
1848 Female, age 42, unknown 96.4
1890 Male, age 53, unknown 96.2
2849 Male, age 72, unknown 93.0
Median raphe nucleus
nTPM: 97.8
2220 Male, age 76, midline 97.8
Pedunculopontine tegmental nucleus
nTPM: 94.4
2334 Male, age 80, both hemispheres 98.6
1921 Female, age 85, both hemispheres 96.5
2338 Male, age 61, both hemispheres 88.1
Periaquaductal grey, anterior
nTPM: 111.5
1947 Male, age 18, unknown 117.0
1795 Male, age 51, unknown 113.4
2502 Female, age 75, unknown 104.0
Periaquaductal grey, dorsal
nTPM: 98.2
1840 Male, age 53, unknown 102.8
2464 Female, age 72, unknown 98.8
1831 Male, age 72, unknown 95.8
2850 Male, age 76, both hemispheres 95.5
Periaquaductal grey, lateral
nTPM: 97.1
2053 Male, age 18, unknown 99.7
2140 Male, age 76, both hemispheres 96.9
2272 Male, age 74, both hemispheres 94.8
Pretectal area
nTPM: 100.3
2007 Male, age 72, unknown 104.5
2825 Male, age 18, unknown 104.5
2224 Female, age 72, unknown 103.1
1816 Male, age 51, unknown 103.0
1817 Female, age 42, unknown 102.0
1815 Male, age 53, unknown 100.4
2667 Female, age 75, unknown 99.8
1944 Female, age 72, unknown 99.2
2273 Male, age 74, both hemispheres 96.8
2407 Male, age 75, both hemispheres 96.0
2316 Male, age 76, right hemisphere 93.7
Red nucleus
nTPM: 93.6
2584 Male, age 75, left hemisphere 96.6
2725 Female, age 75, unknown 95.7
2588 Male, age 74, left hemisphere 95.6
2503 Female, age 72, unknown 95.3
1821 Female, age 72, unknown 94.7
1954 Female, age 42, unknown 94.6
2769 Male, age 72, unknown 93.5
2227 Male, age 72, unknown 92.5
1904 Male, age 53, unknown 92.0
1865 Male, age 51, unknown 91.8
2785 Male, age 18, unknown 91.0
2823 Male, age 76, right hemisphere 89.6
Substantia nigra
nTPM: 98.4
1916 Female, age 42, unknown 102.5
2583 Male, age 75, right hemisphere 101.5
1851 Male, age 51, unknown 101.3
1889 Female, age 72, unknown 99.2
2665 Male, age 74, both hemispheres 98.1
2241 Male, age 72, unknown 97.9
2590 Female, age 75, unknown 97.2
1941 Male, age 53, unknown 97.0
2409 Female, age 72, unknown 96.8
2699 Male, age 18, unknown 92.2
Superior colliculus
nTPM: 99.2
2664 Male, age 75, both hemispheres 108.3
2261 Male, age 18, unknown 105.1
1796 Male, age 53, unknown 103.8
2668 Female, age 75, unknown 103.4
2087 Female, age 72, unknown 98.7
1839 Male, age 51, unknown 95.4
1995 Male, age 72, unknown 95.3
2587 Male, age 74, left hemisphere 95.3
1913 Female, age 42, unknown 94.2
1895 Male, age 76, right hemisphere 92.0
Ventral tegmental area
nTPM: 99.3
1942 Male, age 51, unknown 103.9
2410 Female, age 72, unknown 102.1
1915 Female, age 42, unknown 101.0
2021 Male, age 53, unknown 98.8
2218 Male, age 76, both hemispheres 95.1
2223 Female, age 72, unknown 95.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 83.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 83.4
Samples: 139

Max nTPM: 183.5
Min nTPM: 44.6
Std nTPM: 21.0
Median nTPM: 79.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 183.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 167.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 139.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 139.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 119.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 115.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 113.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 112.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 111.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 111.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 108.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.7
FF:10158-103A5 76 years, female 16.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.0
Pig sample Sample description nTPM
Midbrain
nTPM: 14.2
Samples: 4

Max nTPM: 23.2
Min nTPM: 5.8
Sample A Female 5.8
Sample B Female 10.3
Sample C Male 17.4
Sample D Male 23.2
Periaqueductal gray
nTPM: 9.9
Samples: 3

Max nTPM: 11.6
Min nTPM: 8.7
Sample B Female 8.7
Sample C Male 11.6
Sample D Male 9.4
Substantia nigra
nTPM: 11.5
Samples: 4

Max nTPM: 16.5
Min nTPM: 4.1
Sample A Female 16.5
Sample B Female 9.7
Sample C Male 15.6
Sample D Male 4.1
Superior colliculi
nTPM: 16.0
Samples: 4

Max nTPM: 18.6
Min nTPM: 12.7
Sample A Female 18.6
Sample B Female 16.8
Sample C Male 15.9
Sample D Male 12.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 63.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 63.6
Samples: 4

Max nTPM: 68.7
Min nTPM: 58.8
Sample A Male 68.7
Sample B Male 58.8
Sample C Female 59.9
Sample D Female 67.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
77910727 Antisense, RP_070208_04_F08, Mouse strain C57BL/6J (56 days, male) 3.7
583862 Antisense, RP_040831_01_C01, Mouse strain C57BL/6J (56 days, male) 1.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.