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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:75.1 nTPM
HPA:75.1 nTPM
GTEx:99.3 nTPM
FANTOM5:303.4 Scaled Tags Per Million
Pig:425.7 nTPM
Mouse:720.6 nTPM
Allen mouse:20.5 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 75.1
Sample id Sample description nTPM
Amygdala
nTPM: 33.5
1987 Female, age 91, left hemisphere 56.4
2517 Female, age 94, left hemisphere 40.5
2514 Male, age 75, right hemisphere 32.6
2695 Female, age 67, right hemisphere 20.1
2814 Male, age 76, right hemisphere 18.1
Basal amygdala
nTPM: 51.6
2243 Female, age 91, right hemisphere 79.8
2685 Female, age 94, left hemisphere 61.3
2110 Male, age 80, left hemisphere 51.8
2827 Female, age 67, right hemisphere 42.2
1955 Male, age 76, both hemispheres 39.0
2609 Male, age 75, right hemisphere 35.3
Central amygdala
nTPM: 43.0
2239 Male, age 80, left hemisphere 67.8
2826 Female, age 94, left hemisphere 45.4
2701 Female, age 91, right hemisphere 42.6
2515 Male, age 75, right hemisphere 38.8
1905 Male, age 76, both hemispheres 20.2
Corticomedial amygdala
nTPM: 57.9
2829 Male, age 80, left hemisphere 77.0
2242 Female, age 91, right hemisphere 73.9
2429 Female, age 94, left hemisphere 58.2
2535 Female, age 67, right hemisphere 57.2
2240 Male, age 76, both hemispheres 44.9
2428 Male, age 75, right hemisphere 36.2
Lateral amygdala
nTPM: 40.0
2255 Female, age 91, right hemisphere 56.7
2534 Female, age 94, left hemisphere 53.9
2256 Male, age 80, left hemisphere 49.0
1883 Male, age 76, both hemispheres 33.8
2830 Female, age 67, right hemisphere 25.2
2516 Male, age 75, right hemisphere 21.4
Stria terminalis, bed nucleus
nTPM: 75.1
1974 Female, age 91, both hemispheres 94.1
2486 Female, age 94, both hemispheres 81.0
2201 Male, age 74, unknown 50.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 99.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 99.3
Samples: 152

Max nTPM: 293.7
Min nTPM: 3.5
Std nTPM: 58.1
Median nTPM: 90.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 293.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 287.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 260.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 235.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 226.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 218.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 213.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 210.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 203.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 198.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 197.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 197.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 193.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 180.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 175.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 173.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 173.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 172.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 166.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 164.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 163.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 162.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 158.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 156.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 155.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 154.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 153.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 152.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 152.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 150.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 145.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 145.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 143.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 139.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 138.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 135.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 133.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 129.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 128.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 128.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 128.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 127.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 126.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 125.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 125.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 124.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 123.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 123.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 122.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 121.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 119.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 119.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 116.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 116.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 114.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 114.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 110.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 109.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 107.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 106.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 105.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 105.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 104.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 102.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 100.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 99.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 99.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 99.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 98.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 98.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 96.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 96.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 95.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 94.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 92.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 91.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 90.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 89.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 89.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 88.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 87.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 84.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 84.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 83.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 83.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 82.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 82.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 78.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 77.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 77.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 74.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 73.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 73.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 72.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 72.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 70.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 69.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 69.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 66.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 66.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 65.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 65.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 64.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 64.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 64.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 63.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 62.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 60.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 59.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 58.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 58.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 58.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 56.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 55.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 52.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 52.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 50.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 50.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 49.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 48.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 48.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 48.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 46.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 45.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 43.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 43.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 43.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 42.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 41.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 41.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 38.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 38.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 37.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 37.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 35.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 34.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 34.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 34.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 34.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 30.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 27.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 25.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 24.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 21.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 21.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 21.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 17.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 14.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 13.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 12.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 7.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 3.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 303.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 303.4
FF:10151-102I7 76 years, female 303.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 425.7
Pig sample Sample description nTPM
Amygdala
nTPM: 425.7
Samples: 4

Max nTPM: 576.3
Min nTPM: 338.2
Sample A Female 576.3
Sample B Female 338.2
Sample C Male 412.7
Sample D Male 375.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 720.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 720.6
Samples: 4

Max nTPM: 772.3
Min nTPM: 686.5
Sample A Male 686.5
Sample B Male 772.3
Sample C Female 687.7
Sample D Female 735.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 20.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 20.5
73520985 Antisense, RP_051101_02_G04, Mouse strain C57BL/6J (56 days, male) 20.8
69735078 Antisense, RP_050503_02_A07, Mouse strain C57BL/6J (56 days, male) 20.1

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