HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:49.3 nTPM
HPA:49.3 nTPM
GTEx:30.2 nTPM
FANTOM5:77.7 Scaled Tags Per Million
Pig:252.7 nTPM
Mouse:303.7 nTPM
Allen mouse:8.7 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 49.3
Sample id Sample description nTPM
Hippocampus
nTPM: 0.0
1855 Male, age 76, left hemisphere 0.0
1898 Male, age 80, left hemisphere 0.0
1911 Female, age 85, right hemisphere 0.0
2148 Female, age 91, left hemisphere 0.0
2529 Female, age 94, left hemisphere 0.0
2621 Female, age 67, right hemisphere 0.0
Dentate gyrus
nTPM: 0.0
1927 Female, age 91, both hemispheres 0.0
2010 Male, age 76, both hemispheres 0.0
2246 Female, age 85, both hemispheres 0.0
2528 Male, age 74, both hemispheres 0.0
2530 Female, age 94, left hemisphere 0.0
2531 Female, age 67, both hemispheres 0.0
Entorhinal gyrus
nTPM: 10.9
2764 Male, age 80, right hemisphere 32.7
2613 Female, age 94, left hemisphere 23.8
1938 Female, age 85, left hemisphere 9.1
1787 Male, age 76, left hemisphere 0.0
2117 Female, age 91, right hemisphere 0.0
2686 Male, age 75, right hemisphere 0.0
Hippocampus, CA1
nTPM: 1.7
2045 Male, age 76, both hemispheres 8.5
1873 Female, age 85, both hemispheres 0.0
2082 Female, age 91, right hemisphere 0.0
2527 Male, age 74, both hemispheres 0.0
2749 Male, age 80, left hemisphere 0.0
Hippocampus, CA2
nTPM: 2.3
1892 Male, age 76, both hemispheres 14.0
1940 Female, age 85, left hemisphere 0.0
1963 Male, age 80, left hemisphere 0.0
2113 Female, age 91, right hemisphere 0.0
2249 Male, age 74, both hemispheres 0.0
2437 Female, age 94, left hemisphere 0.0
Hippocampus, CA3
nTPM: 6.1
1867 Male, age 76, both hemispheres 36.8
1891 Female, age 85, both hemispheres 0.0
2137 Male, age 80, left hemisphere 0.0
2436 Male, age 74, both hemispheres 0.0
2620 Female, age 94, left hemisphere 0.0
2861 Female, age 67, both hemispheres 0.0
Parahippocampal cortex
nTPM: 16.6
1850 Male, age 80, both hemispheres 53.0
2532 Female, age 72, left hemisphere 39.6
1990 Female, age 91, right hemisphere 28.5
1933 Female, age 85, both hemispheres 20.1
2245 Female, age 91, both hemispheres 16.6
2693 Female, age 94, both hemispheres 8.3
2018 Male, age 76, both hemispheres 0.0
2250 Female, age 67, right hemisphere 0.0
2622 Female, age 67, right hemisphere 0.0
2692 Male, age 74, both hemispheres 0.0
Perirhinal gyrus
nTPM: 49.3
1847 Female, age 91, left hemisphere 90.6
1841 Female, age 85, right hemisphere 62.8
1794 Male, age 80, right hemisphere 47.7
2521 Female, age 94, right hemisphere 36.2
2848 Male, age 76, right hemisphere 9.2
Subiculum
nTPM: 0.0
1901 Male, age 80, both hemispheres 0.0
1977 Female, age 85, both hemispheres 0.0
2042 Male, age 76, both hemispheres 0.0
2438 Female, age 94, left hemisphere 0.0
2619 Male, age 74, both hemispheres 0.0
2729 Female, age 91, right hemisphere 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 30.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 30.2
Samples: 197

Max nTPM: 239.5
Min nTPM: 0.6
Std nTPM: 40.1
Median nTPM: 15.3
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 239.5
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 196.4
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 167.3
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 165.4
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 165.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 160.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 160.6
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 145.3
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 133.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 123.4
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 119.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 77.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 77.7
FF:10169-103B7 60 years, female 87.8
FF:10153-102I9 76 years, female 67.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 252.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 78.8
Samples: 4

Max nTPM: 115.9
Min nTPM: 28.8
Sample A Female 110.3
Sample B Female 60.1
Sample C Male 115.9
Sample D Male 28.8
Entorhinal cortex
nTPM: 252.8
Samples: 4

Max nTPM: 301.9
Min nTPM: 225.5
Sample A Female 256.6
Sample B Female 301.9
Sample C Male 225.5
Sample D Male 227.0
Subiculum
nTPM: 174.6
Samples: 4

Max nTPM: 280.7
Min nTPM: 113.2
Sample A Female 280.7
Sample B Female 140.5
Sample C Male 113.2
Sample D Male 163.9
Ventral hippocampus
nTPM: 59.2
Samples: 4

Max nTPM: 75.1
Min nTPM: 48.9
Sample A Female 48.9
Sample B Female 55.8
Sample C Male 57.1
Sample D Male 75.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 303.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 303.7
Samples: 4

Max nTPM: 400.9
Min nTPM: 229.7
Sample A Male 309.8
Sample B Male 400.9
Sample C Female 229.7
Sample D Female 274.2
Hippocampal formation
nTPM: 148.9
Samples: 4

Max nTPM: 176.2
Min nTPM: 133.3
Sample A Male 176.2
Sample B Male 133.3
Sample C Female 141.8
Sample D Female 144.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.7
74511884 Antisense, RP_060117_02_C07, Mouse strain C57BL/6J (56 days, male) 11.3
79632282 Antisense, RP_071204_01_B12, Mouse strain C57BL/6J (56 days, male) 11.2
2532 Antisense, RP_040625_02_A06, Mouse strain C57BL/6J (56 days, male) 3.7
1569 Antisense, RP_040625_02_A06, Mouse strain C57BL/6J (56 days, male) 3.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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