BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:6.0 nTPM
HPA:6.0 nTPM
GTEx:4.0 nTPM
FANTOM5:1.6 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 6.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 5.8
2288 Male, age 75, left hemisphere 6.5
2481 Female, age 94, left hemisphere 6.3
2846 Female, age 79, unknown 6.2
1781 Male, age 74, unknown 5.7
1854 Male, age 80, left hemisphere 5.6
2289 Male, age 61, right hemisphere 5.6
2290 Female, age 72, unknown 5.4
1857 Female, age 85, left hemisphere 5.3
Claustrum
nTPM: 5.4
2392 Female, age 94, both hemispheres 6.2
2198 Male, age 80, both hemispheres 5.9
2645 Female, age 72, unknown 5.6
2491 Male, age 75, both hemispheres 5.5
2196 Female, age 79, unknown 5.4
2284 Female, age 91, both hemispheres 5.3
2292 Female, age 85, both hemispheres 4.9
1956 Male, age 74, unknown 4.8
2568 Male, age 61, both hemispheres 4.8
Globus pallidus, externus
nTPM: 5.5
2772 Female, age 79, unknown 7.5
1996 Male, age 80, right hemisphere 5.5
2395 Male, age 75, both hemispheres 5.2
2646 Male, age 61, right hemisphere 4.9
2567 Female, age 72, unknown 4.6
Globus pallidus, internus
nTPM: 5.7
1818 Male, age 74, unknown 7.4
2483 Female, age 94, right hemisphere 6.3
2037 Male, age 80, right hemisphere 5.9
2287 Male, age 75, right hemisphere 5.7
2778 Female, age 91, both hemispheres 5.6
2111 Female, age 85, right hemisphere 5.0
2566 Female, age 72, unknown 4.4
Nucleus accumbens
nTPM: 5.6
2286 Male, age 75, left hemisphere 6.6
1783 Male, age 74, unknown 6.2
1856 Female, age 91, right hemisphere 6.0
2698 Female, age 72, unknown 5.9
2391 Female, age 94, left hemisphere 5.4
2824 Male, age 61, right hemisphere 5.4
1806 Female, age 85, left hemisphere 5.0
2732 Male, age 80, right hemisphere 4.6
Nucleus basalis of Meynert
nTPM: 5.1
2484 Female, age 94, left hemisphere 5.6
2393 Male, age 80, right hemisphere 5.1
2569 Male, age 61, both hemispheres 4.9
2821 Male, age 75, both hemispheres 4.8
Nucleus of the diagonal band
nTPM: 6.0
2029 Male, age 61, right hemisphere 6.7
2775 Male, age 80, right hemisphere 6.5
1812 Female, age 91, both hemispheres 6.2
2195 Female, age 85, both hemispheres 5.8
1979 Male, age 74, unknown 4.8
Olfactory tubercle
nTPM: 5.9
1846 Male, age 80, right hemisphere 6.3
1998 Female, age 91, both hemispheres 6.0
2487 Female, age 94, left hemisphere 5.8
2856 Male, age 75, right hemisphere 5.6
Putamen
nTPM: 5.4
1838 Male, age 80, right hemisphere 6.1
1937 Female, age 91, right hemisphere 6.1
2466 Female, age 79, unknown 5.8
2482 Female, age 94, left hemisphere 5.6
1829 Male, age 74, unknown 5.0
2489 Female, age 72, unknown 4.6
2647 Male, age 75, left hemisphere 4.5
Septal nuclei
nTPM: 5.9
2031 Female, age 72, unknown 6.9
1960 Male, age 74, unknown 6.4
2009 Female, age 91, both hemispheres 6.2
2059 Female, age 85, both hemispheres 5.8
2199 Male, age 80, right hemisphere 5.6
2629 Female, age 94, right hemisphere 5.6
2394 Male, age 61, left hemisphere 5.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 4.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3.5
Samples: 246

Max nTPM: 15.1
Min nTPM: 0.0
Std nTPM: 2.3
Median nTPM: 2.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 15.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 11.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 11.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 10.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 9.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 9.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 9.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 8.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 8.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 8.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 8.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 3.4
Samples: 246

Max nTPM: 14.3
Min nTPM: 0.0
Std nTPM: 2.5
Median nTPM: 2.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 14.3
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 12.3
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 11.1
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 10.8
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 10.8
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 10.6
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 10.5
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 10.0
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 9.7
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 9.5
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 9.1
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Brain - Putamen (basal ganglia)
Average nTPM: 4.0
Samples: 205

Max nTPM: 11.8
Min nTPM: 0.0
Std nTPM: 2.5
Median nTPM: 3.4
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 11.8
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 10.2
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 10.0
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 10.0
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 9.9
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 9.8
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 9.8
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 9.5
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 9.4
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 9.4
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 9.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.7
FF:10164-103B2 76 years, female 0.7
Globus pallidus
Scaled Tags Per Million: 1.6
FF:10175-103C4 60 years, female 2.3
FF:10161-103A8 76 years, female 0.9
Nucleus accumbens
Scaled Tags Per Million: 1.2
FF:10037-101F1 23-56 years, mixed 1.2
Putamen
Scaled Tags Per Million: 0.8
FF:10176-103C5 60 years, female 0.8

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