HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Mouse brain, Intensity
Hippocampal formationi 		81.381
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:20.6 nTPM
HPA:20.6 nTPM
GTEx:29.1 nTPM
FANTOM5:103.6 Scaled Tags Per Million
Mouse:47.7 nTPM
Allen mouse:2.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA031345Antibody HPA058494Antibody CAB002759
Glial cells Not detectedNot detectedNot detected
Neuronal cells Not detectedNot detectedLow






HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA031345
Hippocampal formation mean intensity 81.381
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 40.556
Molecular layer of the dentate gyrus 33.983
Granular dentate gyrus 15.238
CA1 - oriens layer 17.472
CA1 - pyramidal layer 22.283
CA1 - radiatum layer 22.402
CA2 - oriens layer 18.926
CA2 - pyramidal layer 14.492
CA2 - radiatum layer 18.772
CA3 - oriens layer 16.691
CA3 - pyramidal layer 22.719
CA3 - radiatum layer 14.321
Stratum lucidum 13.980
Lacunosum moleculare 81.381
Subiculum 28.824

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 20.6
Sample id Sample description nTPM
Hippocampus
nTPM: 19.9
2529 Female, age 94, left hemisphere 23.5
2621 Female, age 67, right hemisphere 22.0
1855 Male, age 76, left hemisphere 21.5
1911 Female, age 85, right hemisphere 19.0
2148 Female, age 91, left hemisphere 16.9
1898 Male, age 80, left hemisphere 16.8
Dentate gyrus
nTPM: 20.6
2010 Male, age 76, both hemispheres 33.0
2530 Female, age 94, left hemisphere 30.0
2531 Female, age 67, both hemispheres 18.8
2528 Male, age 74, both hemispheres 15.8
2246 Female, age 85, both hemispheres 13.6
1927 Female, age 91, both hemispheres 12.2
Entorhinal gyrus
nTPM: 14.5
1787 Male, age 76, left hemisphere 18.0
2117 Female, age 91, right hemisphere 17.0
2686 Male, age 75, right hemisphere 15.4
2613 Female, age 94, left hemisphere 12.7
2764 Male, age 80, right hemisphere 12.4
1938 Female, age 85, left hemisphere 11.6
Hippocampus, CA1
nTPM: 18.4
2045 Male, age 76, both hemispheres 25.4
2527 Male, age 74, both hemispheres 22.7
1873 Female, age 85, both hemispheres 16.5
2749 Male, age 80, left hemisphere 14.6
2082 Female, age 91, right hemisphere 12.6
Hippocampus, CA2
nTPM: 18.3
2249 Male, age 74, both hemispheres 24.5
2437 Female, age 94, left hemisphere 23.6
1963 Male, age 80, left hemisphere 20.6
2113 Female, age 91, right hemisphere 14.7
1892 Male, age 76, both hemispheres 14.3
1940 Female, age 85, left hemisphere 12.1
Hippocampus, CA3
nTPM: 20.0
2861 Female, age 67, both hemispheres 28.5
1867 Male, age 76, both hemispheres 22.7
2436 Male, age 74, both hemispheres 21.2
2620 Female, age 94, left hemisphere 17.5
1891 Female, age 85, both hemispheres 16.5
2137 Male, age 80, left hemisphere 13.7
Parahippocampal cortex
nTPM: 17.1
2018 Male, age 76, both hemispheres 38.6
2622 Female, age 67, right hemisphere 17.7
2245 Female, age 91, both hemispheres 17.6
2532 Female, age 72, left hemisphere 15.7
1933 Female, age 85, both hemispheres 14.5
1990 Female, age 91, right hemisphere 14.2
2250 Female, age 67, right hemisphere 13.8
2692 Male, age 74, both hemispheres 13.7
2693 Female, age 94, both hemispheres 13.1
1850 Male, age 80, both hemispheres 11.8
Perirhinal gyrus
nTPM: 12.5
1841 Female, age 85, right hemisphere 14.5
1794 Male, age 80, right hemisphere 13.9
2521 Female, age 94, right hemisphere 12.6
1847 Female, age 91, left hemisphere 12.0
2848 Male, age 76, right hemisphere 9.5
Subiculum
nTPM: 17.7
2042 Male, age 76, both hemispheres 29.2
2619 Male, age 74, both hemispheres 22.0
1977 Female, age 85, both hemispheres 14.6
1901 Male, age 80, both hemispheres 14.0
2438 Female, age 94, left hemisphere 13.9
2729 Female, age 91, right hemisphere 12.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 29.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 29.1
Samples: 197

Max nTPM: 111.0
Min nTPM: 4.9
Std nTPM: 18.5
Median nTPM: 24.7
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 111.0
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 104.4
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 101.3
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 98.9
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 81.0
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 78.3
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 74.6
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 73.5
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 66.3
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 65.8
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 65.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 103.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 103.6
FF:10153-102I9 76 years, female 132.0
FF:10169-103B7 60 years, female 75.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 47.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 47.7
Samples: 4

Max nTPM: 55.8
Min nTPM: 40.2
Sample A Male 41.3
Sample B Male 40.2
Sample C Female 53.6
Sample D Female 55.8
Hippocampal formation
nTPM: 42.3
Samples: 4

Max nTPM: 52.5
Min nTPM: 33.1
Sample A Male 33.4
Sample B Male 33.1
Sample C Female 50.1
Sample D Female 52.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.4
69873875 Antisense, RP_050512_02_B12, Mouse strain C57BL/6J (56 days, male) 3.1
74882936 Antisense, RP_060315_04_H08, Mouse strain C57BL/6J (56 days, male) 1.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.