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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:70.2 nTPM
HPA:70.2 nTPM
GTEx:91.3 nTPM
FANTOM5:100.7 Scaled Tags Per Million
Pig:73.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 70.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 65.7
2816 Male, age 47, midline 68.7
2194 Female, age 79, both hemispheres 68.4
1981 Female, age 72, midline 66.1
2565 Male, age 75, midline 63.8
2048 Male, age 55, midline 61.4
Cervical spinal cord, dorsal horn
nTPM: 68.8
2296 Male, age 66, both hemispheres 89.0
2173 Female, age 72, unknown 78.1
1877 Male, age 55, unknown 66.0
2069 Male, age 47, both hemispheres 64.7
2297 Male, age 75, both hemispheres 58.1
2721 Male, age 90, both hemispheres 57.0
Cervical spinal cord, ventral horn
nTPM: 70.2
2820 Female, age 79, both hemispheres 80.5
2068 Male, age 55, unknown 78.5
2480 Male, age 75, both hemispheres 68.3
2809 Male, age 90, both hemispheres 66.1
2295 Male, age 66, both hemispheres 64.5
2098 Female, age 72, unknown 63.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 91.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 91.3
Samples: 159

Max nTPM: 172.0
Min nTPM: 38.1
Std nTPM: 28.5
Median nTPM: 86.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 172.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 170.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 156.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 148.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 146.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 144.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 144.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 141.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 139.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 137.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 137.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 137.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 136.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 135.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 134.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 132.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 129.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 128.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 127.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 127.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 126.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 124.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 124.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 124.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 122.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 122.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 121.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 120.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 120.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 120.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 120.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 118.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 117.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 117.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 115.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 115.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 111.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 111.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 111.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 110.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 109.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 108.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 108.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 107.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 107.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 105.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 104.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 104.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 103.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 103.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 102.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 102.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 102.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 101.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 101.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 101.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 100.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 100.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 100.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 100.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 98.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 98.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 97.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 97.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 96.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 96.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 95.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 95.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 93.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 93.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 91.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 91.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 90.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 90.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 88.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 87.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 87.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 87.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 86.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 86.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 86.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 86.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 86.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 85.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 85.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 85.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 85.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 84.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 84.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 83.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 83.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 83.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 81.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 81.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 81.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 81.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 80.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 80.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 79.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 79.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 79.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 78.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 78.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 78.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 78.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 77.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 77.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 77.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 77.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 76.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 76.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 74.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 74.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 73.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 73.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 72.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 72.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 72.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 72.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 71.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 71.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 71.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 70.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 70.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 69.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 68.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 68.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 68.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 67.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 67.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 64.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 64.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 64.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 63.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 63.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 61.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 61.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 59.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 59.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 58.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 55.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 55.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 54.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 54.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 52.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 49.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 47.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 47.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 47.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 47.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 46.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 45.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 43.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 42.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 42.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 42.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 41.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 40.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 38.1
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 100.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 100.7
FF:10181-103D1 60 years, female 130.6
FF:10159-103A6 76 years, female 70.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 73.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 60.6
Samples: 4

Max nTPM: 72.3
Min nTPM: 42.4
Sample A Female 70.3
Sample B Female 57.3
Sample C Male 42.4
Sample D Male 72.3
Ventral spinal cord
nTPM: 73.5
Samples: 4

Max nTPM: 80.3
Min nTPM: 67.2
Sample A Female 80.3
Sample B Female 68.6
Sample C Male 67.2
Sample D Male 77.8

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