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ATP6V0B
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  • ATP6V0B
BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:251.1 nTPM
HPA:251.1 nTPM
FANTOM5:77.6 Scaled Tags Per Million
Pig:89.9 nTPM
Allen mouse:17.8 Expression energy

PONS - Annotated protein expression
Pending normal tissue analysis

PONS - HPA Brain RNA-seq
Max nTPM 251.1
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 218.4
2090 Male, age 80, both hemispheres 222.9
2188 Female, age 91, both hemispheres 221.7
1984 Male, age 76, both hemispheres 220.0
2301 Female, age 85, both hemispheres 209.1
Dorsal cochlear nucleus
nTPM: 221.5
2187 Female, age 91, both hemispheres 225.3
2370 Male, age 61, both hemispheres 223.7
2058 Male, age 76, both hemispheres 223.6
2802 Male, age 74, right hemisphere 219.0
2378 Male, age 80, both hemispheres 216.0
Dorsal tegmental nucleus
nTPM: 217.4
2083 Male, age 80, both hemispheres 229.8
2326 Male, age 74, both hemispheres 220.5
1936 Male, age 76, left hemisphere 211.8
2358 Male, age 61, both hemispheres 207.7
Dorsolateral tegmental area
nTPM: 223.8
2751 Female, age 85, both hemispheres 233.1
2654 Male, age 80, both hemispheres 226.0
2360 Male, age 74, both hemispheres 223.6
2141 Male, age 76, both hemispheres 222.1
2337 Male, age 61, both hemispheres 214.2
Kolliker-Fuse nucleus
nTPM: 219.5
2163 Male, age 80, both hemispheres 224.7
2793 Female, age 91, left hemisphere 217.0
2315 Male, age 76, right hemisphere 216.8
Lateral lemniscal nuclei
nTPM: 230.3
2746 Female, age 85, left hemisphere 238.3
2036 Male, age 80, both hemispheres 236.9
2169 Male, age 76, both hemispheres 233.3
2453 Male, age 74, right hemisphere 228.2
2320 Female, age 91, left hemisphere 214.8
Lateral parabrachial nucleus
nTPM: 224.0
2139 Female, age 85, right hemisphere 239.8
2013 Male, age 80, both hemispheres 227.7
2790 Male, age 61, both hemispheres 219.6
2792 Male, age 76, both hemispheres 208.7
Lateral vestibular nucleus
nTPM: 218.3
2184 Male, age 76, both hemispheres 220.3
2311 Male, age 80, both hemispheres 216.4
Locus coeruleus
nTPM: 251.1
2123 Female, age 91, both hemispheres 277.7
1980 Male, age 76, both hemispheres 268.3
2014 Male, age 55, unknown 263.8
2720 Male, age 74, both hemispheres 242.6
2317 Female, age 72, unknown 237.9
2788 Male, age 74, unknown 235.6
2162 Male, age 80, both hemispheres 231.7
Medial olivary nucleus
nTPM: 218.6
2138 Female, age 91, both hemispheres 225.1
1943 Male, age 61, both hemispheres 222.8
1962 Male, age 76, both hemispheres 214.6
2851 Male, age 80, both hemispheres 211.7
Medial parabrachial nucleus
nTPM: 222.9
2170 Female, age 91, both hemispheres 233.8
2463 Female, age 85, right hemisphere 226.4
2854 Male, age 80, both hemispheres 219.4
2786 Male, age 76, both hemispheres 218.1
2156 Male, age 61, both hemispheres 216.7
Medial periolivary nuclei
nTPM: 232.8
2063 Male, age 76, both hemispheres 250.5
2171 Female, age 85, both hemispheres 242.4
2791 Male, age 74, right hemisphere 234.8
2081 Male, age 80, both hemispheres 222.0
2458 Female, age 91, both hemispheres 214.4
Motor facial nucleus
nTPM: 226.1
2062 Male, age 76, both hemispheres 256.2
2365 Male, age 74, right hemisphere 234.9
2126 Male, age 61, both hemispheres 227.4
2697 Female, age 85, both hemispheres 214.2
2795 Female, age 91, both hemispheres 213.6
2327 Male, age 80, both hemispheres 210.4
Motor trigeminal nucleus
nTPM: 221.3
2560 Male, age 74, both hemispheres 235.8
2079 Male, age 80, both hemispheres 225.9
2335 Male, age 61, both hemispheres 220.0
2309 Male, age 76, both hemispheres 213.5
2321 Female, age 91, both hemispheres 211.5
Nuclei of the trapezoid body
nTPM: 236.3
1983 Male, age 76, both hemispheres 251.5
2735 Female, age 85, both hemispheres 247.9
2159 Male, age 61, both hemispheres 244.8
2166 Male, age 80, both hemispheres 223.5
2368 Female, age 91, both hemispheres 213.9
Paramedian reticular nucleus
nTPM: 232.9
2050 Female, age 85, both hemispheres 246.4
2057 Male, age 80, both hemispheres 240.0
2313 Male, age 61, both hemispheres 237.9
2052 Male, age 76, both hemispheres 207.2
Pontine nuclei
nTPM: 243.6
2727 Male, age 61, right hemisphere 256.8
2787 Female, age 85, both hemispheres 255.6
1863 Male, age 55, unknown 253.4
2109 Female, age 72, unknown 253.2
2454 Male, age 74, left hemisphere 243.9
1968 Male, age 76, left hemisphere 242.0
2115 Male, age 80, left hemisphere 221.9
2319 Female, age 91, both hemispheres 221.9
Pontine raphe nucleus
nTPM: 234.0
2122 Female, age 85, midline 242.4
2853 Male, age 76, midline 225.6
Posteroventral cochlear nucleus
nTPM: 226.5
2752 Female, age 85, both hemispheres 239.4
2070 Male, age 76, both hemispheres 229.0
2135 Female, age 91, both hemispheres 224.7
2371 Male, age 61, both hemispheres 223.3
2341 Male, age 80, both hemispheres 216.1
Principal sensory trigeminal nucleus
nTPM: 227.1
2158 Male, age 61, both hemispheres 248.1
2008 Male, age 80, left hemisphere 231.9
2367 Female, age 91, left hemisphere 217.2
2324 Male, age 76, both hemispheres 211.1
Reticular pontine nucleus, caudal
nTPM: 223.4
2092 Male, age 76, both hemispheres 235.5
2559 Male, age 74, both hemispheres 222.3
2332 Male, age 80, right hemisphere 219.1
2457 Female, age 91, both hemispheres 216.8
Reticular pontine nucleus, oral
nTPM: 230.3
2361 Male, age 74, both hemispheres 250.2
2012 Female, age 85, both hemispheres 235.7
1939 Male, age 80, both hemispheres 230.8
2167 Male, age 76, both hemispheres 220.8
2366 Female, age 91, both hemispheres 213.8
Reticulotegmental nucleus
nTPM: 221.3
2452 Male, age 74, both hemispheres 229.1
2325 Male, age 76, both hemispheres 226.2
2333 Male, age 80, both hemispheres 215.7
2322 Female, age 91, both hemispheres 214.3
Spinal trigeminal nucleus, oral
nTPM: 222.1
2737 Female, age 85, both hemispheres 228.2
2164 Male, age 80, both hemispheres 220.6
1978 Male, age 76, both hemispheres 217.6
Subcoeruleus area
nTPM: 224.9
2323 Female, age 91, left hemisphere 229.7
2369 Female, age 85, left hemisphere 227.3
1958 Male, age 80, both hemispheres 224.5
2089 Male, age 76, left hemisphere 222.3
2451 Male, age 74, both hemispheres 220.9
Superior olive
nTPM: 227.6
1875 Female, age 85, both hemispheres 241.9
2364 Male, age 74, right hemisphere 241.8
2020 Male, age 76, both hemispheres 226.9
2561 Female, age 91, both hemispheres 213.9
2329 Male, age 80, right hemisphere 213.4
Superior vestibular nucleus
nTPM: 222.4
2061 Male, age 76, both hemispheres 224.2
2015 Male, age 80, both hemispheres 223.1
2383 Male, age 74, both hemispheres 219.8
Ventral periolivary nuclei
nTPM: 222.9
2165 Male, age 80, both hemispheres 231.3
2130 Female, age 85, both hemispheres 228.5
2023 Male, age 76, both hemispheres 221.8
2794 Female, age 91, left hemisphere 209.8
Ventrolateral tegmental area, A5 NE cell group
nTPM: 225.4
2449 Male, age 74, both hemispheres 233.5
2359 Male, age 61, both hemispheres 231.6
1959 Male, age 76, both hemispheres 226.6
2161 Male, age 80, both hemispheres 223.0
2840 Female, age 85, both hemispheres 219.4
2456 Female, age 91, both hemispheres 218.2

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 77.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 56.4
FF:10165-103B3 76 years, female 69.3
FF:10182-103D2 60 years, female 43.4
Pons
Scaled Tags Per Million: 77.6
FF:10033-101E6 18-54 years, mixed 77.6

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 89.9
Pig sample Sample description nTPM
Pons
nTPM: 89.9
Samples: 4

Max nTPM: 109.7
Min nTPM: 72.5
Sample A Female 109.7
Sample B Female 72.5
Sample C Male 88.2
Sample D Male 89.3

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 17.8
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 17.8
293682 Antisense, RP_040604_02_H09, Mouse strain C57BL/6J (56 days, male) 18.4
71608227 Antisense, RP_050927_01_C11, Mouse strain C57BL/6J (56 days, male) 17.3

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by the Knut & Alice Wallenberg Foundation.