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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:27.9 nTPM
HPA:27.9 nTPM
GTEx:42.5 nTPM
FANTOM5:27.6 Scaled Tags Per Million
Pig:19.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 27.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 25.3
1981 Female, age 72, midline 29.1
2194 Female, age 79, both hemispheres 27.9
2816 Male, age 47, midline 25.2
2048 Male, age 55, midline 22.8
2565 Male, age 75, midline 21.6
Cervical spinal cord, dorsal horn
nTPM: 27.9
2296 Male, age 66, both hemispheres 38.0
2173 Female, age 72, unknown 33.5
2069 Male, age 47, both hemispheres 27.5
1877 Male, age 55, unknown 25.2
2297 Male, age 75, both hemispheres 22.7
2721 Male, age 90, both hemispheres 20.7
Cervical spinal cord, ventral horn
nTPM: 25.8
2068 Male, age 55, unknown 29.7
2098 Female, age 72, unknown 26.7
2820 Female, age 79, both hemispheres 26.4
2480 Male, age 75, both hemispheres 25.3
2295 Male, age 66, both hemispheres 24.0
2809 Male, age 90, both hemispheres 22.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 42.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 42.5
Samples: 159

Max nTPM: 113.8
Min nTPM: 9.0
Std nTPM: 18.1
Median nTPM: 39.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 113.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 87.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 83.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 83.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 78.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 78.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 78.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 77.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 76.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 76.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 76.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 73.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 68.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 67.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 67.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 67.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 64.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 63.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 63.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 62.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 62.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 61.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 61.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 61.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 60.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 60.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 59.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 58.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 58.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 58.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 58.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 57.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 57.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 57.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 56.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 56.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 56.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 54.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 54.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 54.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 54.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 53.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 53.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 53.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 53.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 53.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 52.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 52.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 51.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 50.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 50.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 50.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 50.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 49.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 49.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 49.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 49.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 48.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 47.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 47.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 46.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 45.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 45.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 44.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 44.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 44.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 44.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 43.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 43.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 43.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 43.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 43.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 43.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 43.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 41.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 41.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 41.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 40.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 39.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 39.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 38.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 38.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 38.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 38.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 37.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 37.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 37.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 36.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 36.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 36.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 36.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 35.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 34.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 34.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 34.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 34.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 34.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 34.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 34.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 33.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 33.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 33.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 32.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 32.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 32.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 32.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 32.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 32.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 32.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 31.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 30.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 30.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 30.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 30.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 30.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 30.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 30.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 29.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 29.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 29.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 29.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 29.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 28.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 27.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 27.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 26.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 26.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 25.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 25.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 25.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 25.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 25.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 24.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 24.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 24.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 24.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 24.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 24.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 23.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 23.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 21.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 21.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 21.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 21.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 21.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 20.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 20.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 20.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 19.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 18.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 18.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 17.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 16.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 16.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 15.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 14.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 12.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 9.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 9.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 27.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 27.6
FF:10181-103D1 60 years, female 34.4
FF:10159-103A6 76 years, female 20.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 19.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 16.7
Samples: 4

Max nTPM: 19.0
Min nTPM: 14.4
Sample A Female 14.9
Sample B Female 18.3
Sample C Male 14.4
Sample D Male 19.0
Ventral spinal cord
nTPM: 19.4
Samples: 4

Max nTPM: 21.8
Min nTPM: 16.9
Sample A Female 17.1
Sample B Female 21.8
Sample C Male 16.9
Sample D Male 21.8

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