MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:23.6 nTPM
HPA:23.6 nTPM
GTEx:40.6 nTPM
FANTOM5:155.5 Scaled Tags Per Million
Pig:37.1 nTPM
Mouse:19.8 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 23.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.5
2828 Female, age 72, unknown 24.7
2411 Female, age 72, unknown 24.5
1830 Male, age 51, unknown 21.4
2019 Male, age 18, unknown 20.0
1870 Female, age 42, unknown 19.4
1827 Male, age 72, unknown 18.5
2666 Male, age 74, left hemisphere 18.5
2219 Male, age 76, both hemispheres 17.2
1833 Male, age 53, unknown 16.5
2586 Male, age 75, left hemisphere 14.1
Dorsal raphe nucleus
nTPM: 19.6
2016 Female, age 72, unknown 24.8
2750 Male, age 76, both hemispheres 21.2
2298 Female, age 72, unknown 20.2
2047 Male, age 72, unknown 17.7
1828 Male, age 53, unknown 14.3
Inferior colliculus
nTPM: 16.8
1890 Male, age 53, unknown 17.3
2097 Female, age 72, unknown 17.2
2849 Male, age 72, unknown 16.9
1848 Female, age 42, unknown 16.1
Median raphe nucleus
nTPM: 16.9
2220 Male, age 76, midline 16.9
Pedunculopontine tegmental nucleus
nTPM: 18.5
2334 Male, age 80, both hemispheres 20.0
2338 Male, age 61, both hemispheres 19.8
1921 Female, age 85, both hemispheres 15.6
Periaquaductal grey, anterior
nTPM: 20.8
1795 Male, age 51, unknown 23.1
2502 Female, age 75, unknown 19.7
1947 Male, age 18, unknown 19.5
Periaquaductal grey, dorsal
nTPM: 17.6
2464 Female, age 72, unknown 18.6
1831 Male, age 72, unknown 17.5
2850 Male, age 76, both hemispheres 17.2
1840 Male, age 53, unknown 17.0
Periaquaductal grey, lateral
nTPM: 20.3
2272 Male, age 74, both hemispheres 25.0
2140 Male, age 76, both hemispheres 19.6
2053 Male, age 18, unknown 16.2
Pretectal area
nTPM: 17.8
2273 Male, age 74, both hemispheres 24.5
2667 Female, age 75, unknown 19.7
2224 Female, age 72, unknown 19.5
1815 Male, age 53, unknown 19.2
2316 Male, age 76, right hemisphere 18.6
2825 Male, age 18, unknown 18.2
2407 Male, age 75, both hemispheres 16.9
2007 Male, age 72, unknown 16.8
1817 Female, age 42, unknown 16.7
1944 Female, age 72, unknown 13.1
1816 Male, age 51, unknown 12.2
Red nucleus
nTPM: 23.6
2503 Female, age 72, unknown 30.4
2227 Male, age 72, unknown 30.0
2588 Male, age 74, left hemisphere 28.1
1904 Male, age 53, unknown 28.0
2769 Male, age 72, unknown 27.1
1865 Male, age 51, unknown 25.5
2785 Male, age 18, unknown 24.9
2823 Male, age 76, right hemisphere 20.7
2725 Female, age 75, unknown 19.7
1954 Female, age 42, unknown 18.6
2584 Male, age 75, left hemisphere 17.7
1821 Female, age 72, unknown 12.7
Substantia nigra
nTPM: 16.7
1851 Male, age 51, unknown 20.7
2590 Female, age 75, unknown 19.5
2583 Male, age 75, right hemisphere 19.1
1916 Female, age 42, unknown 18.9
2699 Male, age 18, unknown 18.8
2665 Male, age 74, both hemispheres 17.2
1889 Female, age 72, unknown 15.7
1941 Male, age 53, unknown 15.5
2409 Female, age 72, unknown 12.3
2241 Male, age 72, unknown 9.0
Superior colliculus
nTPM: 19.9
1995 Male, age 72, unknown 28.3
1913 Female, age 42, unknown 27.6
1796 Male, age 53, unknown 24.6
2587 Male, age 74, left hemisphere 19.3
2087 Female, age 72, unknown 18.4
2261 Male, age 18, unknown 18.2
2668 Female, age 75, unknown 17.1
1839 Male, age 51, unknown 16.2
1895 Male, age 76, right hemisphere 15.8
2664 Male, age 75, both hemispheres 13.9
Ventral tegmental area
nTPM: 20.0
2410 Female, age 72, unknown 21.1
2223 Female, age 72, unknown 21.0
1915 Female, age 42, unknown 20.7
1942 Male, age 51, unknown 19.5
2021 Male, age 53, unknown 19.3
2218 Male, age 76, both hemispheres 18.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 40.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.6
Samples: 139

Max nTPM: 161.4
Min nTPM: 5.4
Std nTPM: 25.4
Median nTPM: 36.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 161.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 151.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 114.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 107.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 99.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 97.3
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 90.4
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 86.0
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 81.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 78.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 77.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 155.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 155.5
FF:10158-103A5 76 years, female 155.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 37.1
Pig sample Sample description nTPM
Midbrain
nTPM: 37.1
Samples: 4

Max nTPM: 47.0
Min nTPM: 27.6
Sample A Female 47.0
Sample B Female 38.3
Sample C Male 27.6
Sample D Male 35.5
Periaqueductal gray
nTPM: 36.8
Samples: 3

Max nTPM: 39.5
Min nTPM: 35.0
Sample B Female 35.0
Sample C Male 39.5
Sample D Male 36.0
Substantia nigra
nTPM: 33.9
Samples: 4

Max nTPM: 37.2
Min nTPM: 31.7
Sample A Female 33.5
Sample B Female 33.0
Sample C Male 31.7
Sample D Male 37.2
Superior colliculi
nTPM: 32.6
Samples: 4

Max nTPM: 38.1
Min nTPM: 26.0
Sample A Female 32.3
Sample B Female 38.1
Sample C Male 26.0
Sample D Male 34.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 19.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.9
Samples: 4

Max nTPM: 28.5
Min nTPM: 11.3
Sample A Male 24.3
Sample B Male 28.5
Sample C Female 11.3
Sample D Female 15.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.