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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN ORAL MUCOSA OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
GTEx:213.4 nTPM
FANTOM5:72.0 Scaled Tags Per Million
Pig:171.8 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA068438Antibody CAB010107
Glial cells LowHigh
Neuronal cells Not detectedMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 213.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 213.4
Samples: 246

Max nTPM: 936.2
Min nTPM: 81.5
Std nTPM: 98.4
Median nTPM: 189.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 936.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 884.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 705.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 559.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 466.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 449.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 441.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 416.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 402.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 394.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 393.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 390.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 386.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 382.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 347.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 341.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 330.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 320.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 311.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 310.9
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 309.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 308.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 303.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 303.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 300.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 290.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 290.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 287.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 286.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 284.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 276.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 273.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 272.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 270.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 269.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 268.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 268.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 267.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 267.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 266.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 266.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 266.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 251.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 250.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 249.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 249.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 249.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 247.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 247.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 246.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 246.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 245.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 241.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 241.4
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 241.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 238.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 238.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 238.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 236.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 236.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 230.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 230.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 230.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 230.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 229.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 229.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 229.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 229.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 227.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 226.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 225.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 223.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 223.3
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 221.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 220.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 219.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 218.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 217.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 216.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 215.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 214.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 213.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 212.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 212.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 211.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 211.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 211.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 211.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 210.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 209.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 209.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 209.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 209.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 208.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 208.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 207.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 207.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 207.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 207.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 206.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 205.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 205.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 203.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 201.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 201.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 200.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 200.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 200.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 200.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 199.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 199.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 198.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 196.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 196.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 195.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 194.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 193.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 191.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 191.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 190.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 190.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 189.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 189.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 189.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 189.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 188.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 188.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 188.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 188.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 187.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 187.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 187.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 186.9
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 186.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 186.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 186.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 185.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 185.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 185.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 185.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 184.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 184.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 184.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 183.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 182.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 182.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 182.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 180.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 180.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 179.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 178.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 178.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 178.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 178.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 177.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 177.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 177.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 177.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 176.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 174.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 174.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 174.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 174.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 173.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 173.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 172.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 169.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 169.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 169.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 169.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 167.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 166.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 166.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 166.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 166.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 165.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 165.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 164.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 164.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 163.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 162.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 162.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 160.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 159.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 159.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 159.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 158.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 158.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 158.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 157.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 156.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 156.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 155.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 155.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 155.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 155.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 154.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 154.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 153.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 152.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 150.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 149.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 149.1
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 148.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 147.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 147.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 146.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 145.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 145.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 144.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 144.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 143.6
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 143.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 143.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 142.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 142.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 142.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 141.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 140.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 139.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 139.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 137.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 137.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 137.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 136.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 136.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 135.6
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 135.2
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 134.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 133.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 133.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 132.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 131.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 131.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 128.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 127.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 126.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 122.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 120.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 120.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 120.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 117.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 113.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 109.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 105.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 81.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 72.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 72.0
FF:10164-103B2 76 years, female 72.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 171.8
Pig sample Sample description nTPM
Caudate
nTPM: 171.8
Samples: 4

Max nTPM: 199.5
Min nTPM: 156.7
Sample A Female 199.5
Sample B Female 163.3
Sample C Male 167.8
Sample D Male 156.7

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