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RCN2
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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
GTEx:47.9 nTPM
FANTOM5:166.8 Scaled Tags Per Million
Pig:32.0 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA030694Antibody HPA030695
Glial cells Not detectedLow
Neuronal cells HighHigh




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 47.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 47.9
Samples: 246

Max nTPM: 148.1
Min nTPM: 24.3
Std nTPM: 12.7
Median nTPM: 45.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 148.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 90.5
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 79.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 79.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 77.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 76.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 74.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 74.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 72.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 72.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 72.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 71.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 70.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 67.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 67.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 67.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 66.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 66.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 65.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 64.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 64.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 64.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 64.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 63.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 63.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 63.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 62.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 62.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 62.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 62.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 62.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 61.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 61.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 60.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 60.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 60.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 59.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 59.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 59.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 59.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 58.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 58.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 58.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 57.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 57.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 56.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 56.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 56.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 56.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 56.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 56.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 55.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 55.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 54.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 54.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 54.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 54.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 54.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 54.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 54.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 53.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 53.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 53.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 53.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 52.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 52.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 52.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 52.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 52.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 52.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 52.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 52.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 52.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 51.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 51.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 51.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 51.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 51.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 50.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 50.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 50.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 50.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 50.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 50.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 49.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 49.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 49.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 49.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 49.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 49.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 49.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 49.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 48.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 48.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 48.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 48.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 48.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 48.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 48.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 48.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 48.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 48.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 48.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 47.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 47.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 47.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 47.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 47.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 47.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 46.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 46.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 46.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 46.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 46.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 46.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 46.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 46.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 46.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 46.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 45.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 45.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 45.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 45.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 45.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 45.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 45.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 45.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 44.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 44.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 44.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 44.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 44.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 44.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 44.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 44.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 44.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 44.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 44.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 44.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 44.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 43.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 43.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 43.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 43.6
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 43.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 43.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 43.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 43.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 43.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 43.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 42.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 42.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 42.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 42.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 42.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 42.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 42.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 42.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 42.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 42.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 42.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 41.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 41.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 41.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 41.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 41.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 41.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 41.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 41.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 41.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 41.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 41.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 41.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 41.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 40.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 40.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 40.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 40.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 39.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 39.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 39.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 39.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 39.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 39.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 39.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 39.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 39.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 39.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 39.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 39.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 39.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 39.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 38.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 38.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 38.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 38.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 38.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 38.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 38.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 38.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 37.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 37.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 37.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 37.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 37.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 37.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 37.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 37.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 37.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 36.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 36.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 36.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 36.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 36.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 36.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 36.3
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 36.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 36.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 36.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 36.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 36.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 36.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 35.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 35.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 35.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 34.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 34.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 34.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 34.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 34.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 34.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 33.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 33.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 32.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 31.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 31.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 31.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 31.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 30.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 30.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 30.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 30.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 30.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 29.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 27.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 24.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 166.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 166.8
FF:10164-103B2 76 years, female 166.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 32.0
Pig sample Sample description nTPM
Caudate
nTPM: 32.0
Samples: 4

Max nTPM: 33.4
Min nTPM: 29.4
Sample A Female 32.1
Sample B Female 29.4
Sample C Male 33.0
Sample D Male 33.4

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