MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:700.7 nTPM
HPA:700.7 nTPM
GTEx:791.0 nTPM
FANTOM5:888.1 Scaled Tags Per Million
Pig:229.8 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 700.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 686.0
1870 Female, age 42, unknown 704.2
2666 Male, age 74, left hemisphere 696.7
2586 Male, age 75, left hemisphere 691.8
2019 Male, age 18, unknown 686.8
2411 Female, age 72, unknown 686.6
1830 Male, age 51, unknown 685.3
2828 Female, age 72, unknown 684.5
1827 Male, age 72, unknown 681.4
1833 Male, age 53, unknown 678.9
2219 Male, age 76, both hemispheres 664.2
Dorsal raphe nucleus
nTPM: 687.8
2016 Female, age 72, unknown 701.6
2298 Female, age 72, unknown 692.9
2750 Male, age 76, both hemispheres 686.0
1828 Male, age 53, unknown 684.4
2047 Male, age 72, unknown 674.2
Inferior colliculus
nTPM: 691.6
2097 Female, age 72, unknown 697.5
1890 Male, age 53, unknown 694.4
2849 Male, age 72, unknown 692.8
1848 Female, age 42, unknown 681.5
Median raphe nucleus
nTPM: 680.5
2220 Male, age 76, midline 680.5
Pedunculopontine tegmental nucleus
nTPM: 691.0
2338 Male, age 61, both hemispheres 703.8
2334 Male, age 80, both hemispheres 695.3
1921 Female, age 85, both hemispheres 673.8
Periaquaductal grey, anterior
nTPM: 687.9
2502 Female, age 75, unknown 704.6
1795 Male, age 51, unknown 682.0
1947 Male, age 18, unknown 677.2
Periaquaductal grey, dorsal
nTPM: 680.9
1840 Male, age 53, unknown 690.6
2850 Male, age 76, both hemispheres 681.3
1831 Male, age 72, unknown 677.1
2464 Female, age 72, unknown 674.4
Periaquaductal grey, lateral
nTPM: 685.9
2053 Male, age 18, unknown 708.6
2140 Male, age 76, both hemispheres 682.4
2272 Male, age 74, both hemispheres 666.7
Pretectal area
nTPM: 680.4
2316 Male, age 76, right hemisphere 693.1
1815 Male, age 53, unknown 686.8
2825 Male, age 18, unknown 685.0
1817 Female, age 42, unknown 681.2
2224 Female, age 72, unknown 680.8
2407 Male, age 75, both hemispheres 680.5
1944 Female, age 72, unknown 679.4
2007 Male, age 72, unknown 679.2
1816 Male, age 51, unknown 675.0
2273 Male, age 74, both hemispheres 671.9
2667 Female, age 75, unknown 671.5
Red nucleus
nTPM: 695.7
2503 Female, age 72, unknown 717.8
1821 Female, age 72, unknown 707.6
1865 Male, age 51, unknown 704.5
2227 Male, age 72, unknown 697.6
2725 Female, age 75, unknown 697.4
1904 Male, age 53, unknown 697.0
2769 Male, age 72, unknown 694.5
2584 Male, age 75, left hemisphere 694.2
1954 Female, age 42, unknown 690.9
2588 Male, age 74, left hemisphere 687.2
2823 Male, age 76, right hemisphere 682.2
2785 Male, age 18, unknown 677.3
Substantia nigra
nTPM: 700.7
2699 Male, age 18, unknown 728.9
1851 Male, age 51, unknown 721.5
2665 Male, age 74, both hemispheres 718.9
2409 Female, age 72, unknown 706.7
2241 Male, age 72, unknown 703.3
1916 Female, age 42, unknown 698.5
2590 Female, age 75, unknown 689.3
1889 Female, age 72, unknown 687.4
1941 Male, age 53, unknown 678.5
2583 Male, age 75, right hemisphere 673.8
Superior colliculus
nTPM: 690.5
2587 Male, age 74, left hemisphere 710.2
1995 Male, age 72, unknown 708.7
1913 Female, age 42, unknown 698.5
2664 Male, age 75, both hemispheres 692.6
2668 Female, age 75, unknown 690.9
1796 Male, age 53, unknown 690.3
1895 Male, age 76, right hemisphere 682.2
1839 Male, age 51, unknown 681.7
2087 Female, age 72, unknown 681.3
2261 Male, age 18, unknown 668.5
Ventral tegmental area
nTPM: 694.5
1915 Female, age 42, unknown 716.3
2223 Female, age 72, unknown 703.4
2021 Male, age 53, unknown 702.8
1942 Male, age 51, unknown 686.6
2410 Female, age 72, unknown 684.5
2218 Male, age 76, both hemispheres 673.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 791.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 791.0
Samples: 139

Max nTPM: 2523.3
Min nTPM: 282.7
Std nTPM: 330.2
Median nTPM: 729.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2523.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2085.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1858.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1740.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1623.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1416.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1349.5
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 1318.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1295.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1278.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1223.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 888.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 888.1
FF:10158-103A5 76 years, female 888.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 229.8
Pig sample Sample description nTPM
Midbrain
nTPM: 207.7
Samples: 4

Max nTPM: 304.2
Min nTPM: 144.9
Sample A Female 304.2
Sample B Female 223.0
Sample C Male 158.6
Sample D Male 144.9
Periaqueductal gray
nTPM: 167.4
Samples: 3

Max nTPM: 172.1
Min nTPM: 163.8
Sample B Female 172.1
Sample C Male 166.4
Sample D Male 163.8
Substantia nigra
nTPM: 229.8
Samples: 4

Max nTPM: 303.2
Min nTPM: 173.7
Sample A Female 303.2
Sample B Female 246.6
Sample C Male 173.7
Sample D Male 195.7
Superior colliculi
nTPM: 226.0
Samples: 4

Max nTPM: 279.6
Min nTPM: 188.2
Sample A Female 279.6
Sample B Female 228.2
Sample C Male 207.9
Sample D Male 188.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.