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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average FPKM
928.2
Number of samples
365
Samples
Sample
Description
FPKM
TCGA-G3-A7M5-01A
76 years, male, asian, stage:i, alive, 447 days
8236.7
TCGA-DD-AACO-01A
40 years, male, asian, stage:i, alive, 1876 days
6736.3
TCGA-RC-A7SB-01A
53 years, male, asian, stage:ii, alive, 588 days
5057.0
TCGA-DD-AAE3-01A
50 years, male, asian, stage:i, alive, 566 days
5038.7
TCGA-ZS-A9CE-01A
79 years, female, white, stage:ii, alive, 1241 days
4736.9
TCGA-K7-A5RG-01A
66 years, male, black or african american, stage:i, alive, 519 days
4561.6
TCGA-BD-A2L6-01A
69 years, male, white, alive, 1363 days
4499.1
TCGA-BC-A3KF-01A
66 years, female, white, stage:i, alive, 8 days
4487.5
TCGA-DD-AADS-01A
63 years, male, asian, stage:i, alive, 474 days
4289.9
TCGA-ED-A7XO-01A
29 years, male, asian, stage:iiia, alive, 427 days
3773.8
TCGA-DD-AAE4-01A
49 years, female, asian, stage:i, alive, 608 days
3486.0
TCGA-DD-AAEI-01A
72 years, male, asian, stage:i, alive, 1531 days
3393.5
TCGA-2Y-A9GZ-01A
82 years, female, white, stage:ii, dead, 848 days
3071.1
TCGA-ES-A2HT-01A
54 years, male, black or african american, stage:i, dead, 438 days
2938.0
TCGA-DD-AADM-01A
58 years, male, asian, stage:ii, dead, 12 days
2856.1
TCGA-DD-AACU-01A
59 years, male, asian, stage:i, alive, 1567 days
2798.4
TCGA-T1-A6J8-01A
68 years, male, white, alive, 23 days
2787.8
TCGA-DD-A3A5-01A
66 years, female, white, stage:iii, dead, 3125 days
2770.6
TCGA-RC-A7SK-01A
59 years, male, asian, stage:i, alive, 472 days
2710.0
TCGA-KR-A7K2-01A
64 years, male, white, stage:i, alive, 829 days
2537.8
TCGA-G3-AAV0-01A
58 years, male, asian, stage:i, alive, 476 days
2528.2
TCGA-2Y-A9H4-01A
68 years, male, black or african american, stage:i, alive, 1452 days
2471.9
TCGA-DD-AADF-01A
64 years, female, asian, stage:i, dead, 115 days
2471.8
TCGA-DD-AAEB-01A
60 years, male, asian, stage:i, alive, 478 days
2432.2
TCGA-GJ-A9DB-01A
68 years, male, white, stage:i, dead, 67 days
2321.7
TCGA-DD-AACE-01A
62 years, male, asian, stage:i, alive, 2184 days
2318.9
TCGA-2Y-A9GS-01A
58 years, male, white, dead, 724 days
2307.1
TCGA-DD-AAD8-01A
73 years, female, asian, stage:i, alive, 1219 days
2289.1
TCGA-FV-A2QR-01A
male, white, stage:i, dead, 581 days
2285.1
TCGA-DD-AAC9-01A
51 years, male, asian, stage:i, alive, 347 days
2275.2
TCGA-DD-AAVW-01A
35 years, male, asian, stage:i, alive, 2317 days
2263.7
TCGA-DD-AAEA-01A
65 years, male, asian, stage:i, alive, 575 days
2245.4
TCGA-K7-A5RF-01A
64 years, male, white, stage:i, alive, 631 days
2200.3
TCGA-XR-A8TD-01A
49 years, female, white, stage:iiib, alive, 1030 days
2181.2
TCGA-DD-AACQ-01A
50 years, male, asian, stage:ii, dead, 432 days
2166.4
TCGA-BC-A10Y-01A
76 years, male, white, dead, 711 days
2161.9
TCGA-FV-A495-01A
51 years, female, white, stage:ii, alive, 1 days
2155.0
TCGA-DD-AACV-01A
53 years, male, asian, stage:i, alive, 1531 days
2153.5
TCGA-2Y-A9H8-01A
85 years, female, white, dead, 633 days
2097.6
TCGA-DD-A4NK-01A
80 years, female, white, stage:iiia, dead, 1210 days
2071.1
TCGA-DD-A4NI-01A
67 years, male, white, stage:ii, alive, 816 days
2070.2
TCGA-BC-A5W4-01A
69 years, male, white, stage:iiia, dead, 547 days
2056.9
TCGA-DD-AADR-01A
58 years, male, asian, stage:i, alive, 2028 days
2006.3
TCGA-DD-AAEH-01A
73 years, male, asian, stage:i, alive, 784 days
1999.4
TCGA-MR-A520-01A
58 years, male, white, stage:i, alive, 229 days
1972.0
TCGA-NI-A4U2-01A
71 years, male, white, stage:iiia, dead, 1791 days
1964.8
TCGA-G3-AAUZ-01A
48 years, male, stage:i, alive, 480 days
1957.3
TCGA-DD-AAE1-01A
52 years, male, asian, stage:i, alive, 552 days
1910.8
TCGA-DD-A39X-01A
78 years, female, white, stage:i, dead, 1694 days
1897.9
TCGA-UB-A7MB-01A
24 years, male, white, stage:ii, alive, 601 days
1853.4
TCGA-DD-AAW0-01A
54 years, male, asian, stage:i, alive, 2015 days
1779.3
TCGA-WQ-AB4B-01A
62 years, male, white, stage:ii, alive, 395 days
1758.9
TCGA-ED-A7PY-01A
20 years, female, asian, stage:ii, alive, 390 days
1743.9
TCGA-BW-A5NO-01A
50 years, male, black or african american, stage:iiia, alive, 20 days
1741.2
TCGA-DD-AACF-01A
68 years, male, asian, stage:i, dead, 365 days
1733.0
TCGA-2Y-A9H1-01A
58 years, male, white, stage:i, dead, 1229 days
1716.4
TCGA-WJ-A86L-01A
68 years, female, white, stage:i, alive, 345 days
1713.8
TCGA-BC-A69I-01A
69 years, male, white, stage:i, alive, 387 days
1652.7
TCGA-WX-AA46-01A
62 years, male, white, stage:ii, alive, 756 days
1632.6
TCGA-DD-A4NO-01A
66 years, male, white, stage:i, alive, 2245 days
1630.2
TCGA-G3-A5SK-01A
58 years, male, white, stage:i, alive, 744 days
1624.8
TCGA-HP-A5N0-01A
88 years, female, dead, 1147 days
1564.9
TCGA-DD-A119-01A
40 years, male, asian, stage:iv, dead, 223 days
1554.3
TCGA-CC-A9FS-01A
55 years, male, asian, stage:ii, alive, 211 days
1543.6
TCGA-MI-A75I-01A
61 years, male, black or african american, alive, 630 days
1528.9
TCGA-DD-AAVS-01A
56 years, male, asian, stage:i, alive, 1823 days
1524.2
TCGA-DD-AADU-01A
60 years, male, asian, stage:ii, alive, 554 days
1499.4
TCGA-CC-A3MC-01A
54 years, male, asian, stage:iiia, alive, 363 days
1471.7
TCGA-UB-A7MD-01A
67 years, male, black or african american, stage:i, dead, 52 days
1453.2
TCGA-DD-AADL-01A
58 years, male, asian, stage:i, alive, 636 days
1439.1
TCGA-DD-AADK-01A
68 years, female, asian, stage:ii, alive, 1049 days
1424.1
TCGA-G3-A3CI-01A
71 years, male, white, stage:i, alive, 180 days
1419.5
TCGA-BD-A3ER-01A
62 years, male, white, stage:ii, alive, 1115 days
1410.2
TCGA-DD-AACJ-01A
75 years, male, asian, stage:ii, alive, 2102 days
1408.2
TCGA-DD-AACT-01A
69 years, female, asian, stage:i, alive, 1562 days
1389.0
TCGA-G3-A5SI-01A
44 years, male, asian, stage:ii, dead, 768 days
1374.3
TCGA-DD-A11C-01A
69 years, male, white, stage:i, alive, 662 days
1372.3
TCGA-BC-A110-01A
51 years, female, black or african american, dead, 2116 days
1370.5
TCGA-DD-AAVZ-01A
38 years, male, asian, stage:i, alive, 1900 days
1346.2
TCGA-DD-AAEG-01A
59 years, female, asian, stage:i, alive, 719 days
1343.5
TCGA-O8-A75V-01A
54 years, male, stage:i, alive, 538 days
1330.7
TCGA-UB-AA0V-01A
69 years, female, white, stage:i, alive, 314 days
1326.3
TCGA-DD-AADV-01A
50 years, male, asian, stage:i, alive, 574 days
1322.5
TCGA-DD-AAW3-01A
69 years, male, asian, stage:i, alive, 1633 days
1313.9
TCGA-ES-A2HS-01A
80 years, male, white, stage:i, dead, 688 days
1294.2
TCGA-DD-AAVY-01A
56 years, male, asian, stage:iiia, alive, 1970 days
1282.9
TCGA-MI-A75H-01A
77 years, male, white, alive, 747 days
1280.4
TCGA-2Y-A9GV-01A
54 years, female, white, stage:i, dead, 2532 days
1279.8
TCGA-DD-AADN-01A
59 years, male, asian, stage:i, alive, 898 days
1279.0
TCGA-5C-A9VH-01A
70 years, male, white, stage:i, alive, 322 days
1263.3
TCGA-2Y-A9HA-01A
70 years, male, white, stage:ii, dead, 36 days
1262.5
TCGA-FV-A2QQ-01A
80 years, male, white, stage:i, alive, 729 days
1254.1
TCGA-2Y-A9HB-01A
66 years, male, stage:i, alive, 260 days
1213.7
TCGA-BC-A10T-01A
76 years, male, white, dead, 837 days
1202.5
TCGA-DD-A1EG-01A
77 years, male, white, stage:i, dead, 1372 days
1199.1
TCGA-FV-A3R2-01A
75 years, male, white, stage:i, dead, 194 days
1195.4
TCGA-DD-AAD3-01A
43 years, male, asian, stage:i, alive, 1295 days
1194.3
TCGA-DD-A115-01A
53 years, male, white, stage:iiia, dead, 2542 days
1157.3
TCGA-DD-A73A-01A
71 years, male, white, stage:i, alive, 728 days
1150.6
TCGA-DD-AAE9-01A
69 years, male, asian, stage:i, alive, 722 days
1140.4
TCGA-DD-A4NN-01A
56 years, female, white, stage:i, dead, 899 days
1134.1
TCGA-DD-A73B-01A
72 years, female, white, stage:i, dead, 283 days
1126.4
TCGA-MI-A75E-01A
61 years, male, white, stage:iiic, alive, 507 days
1104.6
TCGA-DD-AADG-01A
70 years, male, asian, stage:iiia, alive, 1145 days
1097.0
TCGA-G3-A5SM-01A
58 years, male, white, stage:ii, alive, 520 days
1092.9
TCGA-CC-A7IH-01A
58 years, male, asian, stage:iiia, alive, 365 days
1088.5
TCGA-BC-A10X-01A
52 years, female, white, stage:iiia, dead, 770 days
1072.8
TCGA-KR-A7K8-01A
57 years, male, stage:i, alive, 906 days
1069.0
TCGA-UB-A7ME-01A
51 years, male, asian, stage:i, alive, 486 days
1061.9
TCGA-DD-AACW-01A
43 years, male, asian, stage:i, alive, 1424 days
1057.4
TCGA-XR-A8TC-01A
43 years, female, white, stage:i, alive, 1339 days
1053.4
TCGA-DD-A1EK-01A
64 years, female, white, stage:ivb, dead, 558 days
1044.0
TCGA-2Y-A9GU-01A
55 years, female, white, stage:i, alive, 1939 days
1042.3
TCGA-PD-A5DF-01A
58 years, female, white, stage:iiib, dead, 639 days
1039.4
TCGA-2Y-A9H9-01A
70 years, male, white, stage:i, alive, 697 days
1039.0
TCGA-DD-A11D-01A
57 years, female, white, stage:i, dead, 1560 days
1036.9
TCGA-MI-A75G-01A
63 years, male, white, stage:ii, alive, 698 days
1025.5
TCGA-DD-AAW1-01A
55 years, male, asian, stage:iiia, alive, 1989 days
1017.3
TCGA-G3-A25U-01A
63 years, female, asian, stage:i, alive, 1636 days
1015.0
TCGA-FV-A3I1-01A
female, white, stage:ii, dead, 247 days
1008.4
TCGA-K7-A6G5-01A
66 years, male, white, stage:i, alive, 512 days
1004.3
TCGA-G3-A7M8-01A
31 years, male, asian, stage:i, alive, 430 days
1001.6
TCGA-ZS-A9CG-01A
55 years, male, white, stage:ii, alive, 341 days
1000.6
TCGA-EP-A2KB-01A
46 years, female, white, stage:i, dead, 596 days
994.9
TCGA-BC-A10Z-01A
62 years, female, white, stage:i, dead, 34 days
994.4
TCGA-2Y-A9GW-01A
64 years, male, white, stage:i, dead, 1271 days
990.3
TCGA-HP-A5MZ-01A
62 years, male, stage:i, dead, 91 days
987.5
TCGA-ZP-A9CY-01A
66 years, female, white, alive, 782 days
987.2
TCGA-2Y-A9H3-01A
45 years, male, white, stage:ii, alive, 1516 days
979.0
TCGA-DD-AAE7-01A
72 years, male, asian, stage:i, alive, 644 days
975.5
TCGA-EP-A12J-01A
63 years, male, black or african american, stage:i, alive, 570 days
975.2
TCGA-DD-AAW2-01A
69 years, male, asian, stage:i, alive, 1855 days
949.6
TCGA-CC-A5UC-01A
63 years, male, asian, stage:iiia, dead, 347 days
948.4
TCGA-DD-AADA-01A
66 years, female, asian, stage:i, alive, 1233 days
942.3
TCGA-ZS-A9CF-01A
64 years, male, white, stage:ii, alive, 2412 days
936.5
TCGA-DD-A3A8-01A
75 years, male, white, stage:ii, dead, 11 days
929.0
TCGA-G3-A6UC-01A
65 years, male, white, stage:iiib, alive, 671 days
926.2
TCGA-RC-A7SF-01A
66 years, male, asian, stage:i, alive, 579 days
916.0
TCGA-DD-AAE2-01A
51 years, male, asian, stage:i, alive, 638 days
907.1
TCGA-ZP-A9D0-01A
67 years, female, black or african american, alive, 1091 days
903.1
TCGA-2Y-A9GX-01A
68 years, male, white, stage:i, alive, 2442 days
898.0
TCGA-DD-A4NL-01A
46 years, male, white, stage:i, alive, 1711 days
888.0
TCGA-BC-A10S-01A
81 years, male, white, dead, 1423 days
887.7
TCGA-QA-A7B7-01A
48 years, male, black or african american, stage:ii, alive, 94 days
886.7
TCGA-EP-A3JL-01A
76 years, male, white, stage:i, alive, 303 days
877.6
TCGA-CC-A8HS-01A
18 years, male, asian, stage:iiic, dead, 300 days
875.4
TCGA-CC-A7IL-01A
61 years, male, asian, stage:iiia, dead, 278 days
869.5
TCGA-G3-AAV5-01A
67 years, male, white, stage:ii, alive, 354 days
855.4
TCGA-DD-A4NV-01A
61 years, male, white, stage:iiia, alive, 2398 days
853.1
TCGA-3K-AAZ8-01A
65 years, male, black or african american, stage:iiib, alive, 396 days
849.7
TCGA-2Y-A9H6-01A
68 years, female, white, stage:i, alive, 357 days
843.3
TCGA-4R-AA8I-01A
66 years, male, white, stage:ii, dead, 262 days
840.5
TCGA-DD-AACS-01A
39 years, male, asian, stage:i, alive, 1804 days
837.7
TCGA-DD-A116-01A
68 years, male, asian, stage:iiia, dead, 1622 days
835.8
TCGA-DD-AACC-01A
61 years, male, asian, stage:i, dead, 1685 days
835.3
TCGA-5R-AAAM-01A
65 years, female, white, stage:ii, dead, 46 days
831.4
TCGA-5C-AAPD-01A
61 years, male, asian, stage:ii, alive, 20 days
826.8
TCGA-DD-A3A1-01A
65 years, male, stage:iiia, dead, 233 days
823.7
TCGA-LG-A9QD-01A
68 years, male, white, stage:iiia, alive, 366 days
815.9
TCGA-DD-A39V-01A
77 years, male, white, stage:ii, dead, 643 days
815.0
TCGA-MI-A75C-01A
64 years, male, white, stage:i, alive, 291 days
808.4
TCGA-G3-A25V-01A
68 years, male, white, stage:i, alive, 860 days
798.2
TCGA-2Y-A9GT-01A
51 years, male, white, stage:i, dead, 1624 days
797.2
TCGA-G3-AAV2-01A
50 years, male, white, stage:i, alive, 372 days
786.8
TCGA-DD-AAD0-01A
73 years, female, asian, stage:i, alive, 137 days
784.3
TCGA-2Y-A9H5-01A
59 years, female, white, stage:i, dead, 555 days
783.2
TCGA-G3-A3CH-01A
53 years, male, asian, stage:iiia, alive, 780 days
771.4
TCGA-ZS-A9CD-01A
73 years, male, white, stage:ii, dead, 1386 days
770.5
TCGA-G3-A25Z-01A
58 years, male, asian, stage:i, alive, 655 days
761.2
TCGA-G3-A5SL-01A
70 years, male, white, stage:ii, alive, 621 days
754.0
TCGA-5R-AA1C-01A
57 years, male, white, stage:ii, alive, 520 days
718.3
TCGA-FV-A496-01A
84 years, female, white, stage:i, alive, 10 days
707.1
TCGA-2Y-A9GY-01A
64 years, female, white, stage:ii, dead, 757 days
707.0
TCGA-KR-A7K0-01A
65 years, male, white, stage:i, dead, 65 days
700.8
TCGA-ED-A7XP-01A
53 years, female, asian, stage:ii, alive, 400 days
698.7
TCGA-DD-AADJ-01A
70 years, female, asian, stage:i, alive, 1066 days
698.7
TCGA-DD-AAEE-01A
55 years, male, asian, stage:i, alive, 810 days
696.7
TCGA-UB-AA0U-01A
60 years, male, white, stage:ii, alive, 327 days
677.9
TCGA-CC-5259-01A
60 years, female, asian, stage:iiic, alive, 250 days
675.1
TCGA-CC-A7IF-01A
59 years, male, asian, stage:iiia, dead, 649 days
672.3
TCGA-ZP-A9D4-01A
64 years, female, white, alive, 395 days
669.6
TCGA-BC-A217-01A
75 years, female, white, stage:ii, dead, 1397 days
665.8
TCGA-DD-A118-01A
77 years, female, white, stage:ii, alive, 3437 days
664.7
TCGA-WX-AA44-01A
64 years, female, white, stage:i, alive, 615 days
644.5
TCGA-DD-AAEK-01A
51 years, male, asian, stage:ii, alive, 1067 days
643.1
TCGA-GJ-A6C0-01A
75 years, female, white, stage:ii, dead, 31 days
637.1
TCGA-G3-AAV6-01A
53 years, female, white, stage:iiia, dead, 65 days
633.0
TCGA-DD-AAED-01A
51 years, male, asian, stage:i, alive, 763 days
630.3
TCGA-G3-AAV4-01A
83 years, female, white, stage:i, dead, 27 days
629.8
TCGA-DD-AADO-01A
55 years, male, asian, stage:i, alive, 453 days
629.7
TCGA-G3-A25S-01A
64 years, male, white, stage:i, dead, 416 days
624.2
TCGA-DD-A1EI-01A
46 years, male, asian, stage:i, alive, 183 days
620.3
TCGA-NI-A8LF-01A
74 years, male, white, stage:i, alive, 799 days
618.8
TCGA-DD-A73F-01A
77 years, female, white, stage:i, alive, 1085 days
610.4
TCGA-DD-AACK-01A
70 years, male, asian, stage:i, alive, 9 days
610.2
TCGA-DD-A4ND-01A
56 years, female, white, stage:i, alive, 2746 days
609.8
TCGA-DD-AAE6-01A
59 years, female, asian, stage:i, alive, 141 days
604.7
TCGA-DD-A11A-01A
67 years, male, black or african american, stage:i, alive, 79 days
601.2
TCGA-DD-A11B-01A
73 years, male, white, stage:i, dead, 14 days
593.5
TCGA-G3-A3CJ-01A
52 years, male, american indian or alaska native, stage:ii, alive, 594 days
591.6
TCGA-DD-AADP-01A
45 years, male, asian, stage:i, alive, 458 days
587.3
TCGA-DD-A4NR-01A
85 years, female, white, stage:i, dead, 9 days
575.0
TCGA-DD-A4NE-01A
75 years, female, white, stage:iiia, dead, 660 days
574.6
TCGA-DD-AACN-01A
32 years, male, asian, stage:i, alive, 1302 days
574.0
TCGA-ZP-A9CZ-01A
72 years, male, asian, alive, 706 days
572.9
TCGA-DD-AACY-01A
61 years, male, asian, stage:i, alive, 1450 days
561.3
TCGA-DD-A4NJ-01A
54 years, female, white, stage:ii, alive, 928 days
559.9
TCGA-DD-A3A2-01A
76 years, female, white, stage:i, dead, 2131 days
559.6
TCGA-CC-A123-01A
24 years, female, asian, stage:iiia, alive, 219 days
549.9
TCGA-DD-AAVQ-01A
38 years, male, asian, stage:i, alive, 2728 days
544.2
TCGA-CC-A7IE-01A
57 years, male, asian, stage:iiia, dead, 217 days
542.2
TCGA-ED-A4XI-01A
58 years, male, asian, stage:ii, alive, 819 days
540.1
TCGA-CC-5258-01A
48 years, male, asian, stage:ii, dead, 129 days
536.8
TCGA-EP-A3RK-01A
73 years, male, white, stage:iiia, alive, 363 days
534.7
TCGA-BC-A216-01A
62 years, female, white, stage:iiia, alive, 1351 days
524.0
TCGA-BC-A69H-01A
64 years, male, white, stage:ii, alive, 444 days
511.4
TCGA-FV-A4ZP-01A
78 years, male, white, stage:iiia, dead, 2486 days
495.0
TCGA-2Y-A9H7-01A
81 years, female, white, stage:i, alive, 1168 days
494.0
TCGA-EP-A2KC-01A
62 years, male, black or african american, stage:i, dead, 19 days
492.4
TCGA-2Y-A9H0-01A
49 years, male, white, stage:iiia, alive, 3675 days
491.3
TCGA-BD-A3EP-01A
76 years, female, black or african american, stage:i, alive, 409 days
488.4
TCGA-DD-AADI-01A
43 years, female, asian, stage:i, alive, 1085 days
486.3
TCGA-UB-A7MC-01A
59 years, male, white, stage:iiia, alive, 500 days
485.0
TCGA-DD-A73D-01A
68 years, female, white, stage:ii, alive, 693 days
438.8
TCGA-DD-AACG-01A
52 years, male, asian, stage:ii, dead, 469 days
438.1
TCGA-DD-A3A7-01A
67 years, male, stage:iiib, dead, 419 days
434.9
TCGA-DD-A1EJ-01A
71 years, female, white, stage:iiic, dead, 1005 days
434.6
TCGA-EP-A26S-01A
70 years, male, white, stage:i, alive, 608 days
434.3
TCGA-RC-A6M4-01A
74 years, female, white, stage:iiia, alive, 22 days
434.2
TCGA-XR-A8TF-01A
74 years, male, white, stage:i, dead, 693 days
416.8
TCGA-DD-AAVU-01A
46 years, male, asian, stage:ii, alive, 2202 days
415.7
TCGA-DD-A1EF-01A
57 years, female, white, stage:i, dead, 394 days
414.3
TCGA-DD-A4NS-01A
62 years, female, white, stage:i, dead, 2456 days
401.2
TCGA-DD-AAD2-01A
66 years, male, asian, stage:i, alive, 658 days
395.9
TCGA-XR-A8TG-01A
59 years, male, white, stage:i, alive, 898 days
392.2
TCGA-ED-A8O5-01A
59 years, female, asian, stage:iiia, alive, 406 days
391.8
TCGA-CC-A5UE-01A
48 years, male, asian, stage:iiib, dead, 272 days
385.3
TCGA-RC-A7S9-01A
47 years, female, asian, stage:i, alive, 640 days
380.6
TCGA-LG-A6GG-01A
79 years, female, white, stage:ii, alive, 387 days
378.9
TCGA-BC-A8YO-01A
66 years, female, white, stage:iiic, alive, 562 days
378.0
TCGA-CC-A9FW-01A
68 years, male, asian, stage:iiia, alive, 248 days
376.4
TCGA-ZP-A9CV-01A
59 years, male, white, dead, 1088 days
372.7
TCGA-ED-A627-01A
74 years, male, white, stage:i, alive, 423 days
368.8
TCGA-ED-A66X-01A
35 years, male, asian, stage:iiia, alive, 406 days
364.8
TCGA-DD-AADB-01A
51 years, male, asian, stage:i, alive, 1242 days
357.4
TCGA-DD-A39Y-01A
67 years, male, asian, stage:i, dead, 171 days
332.1
TCGA-CC-A8HU-01A
39 years, female, asian, stage:iiia, dead, 344 days
325.1
TCGA-CC-A7IK-01A
59 years, male, asian, stage:iiia, dead, 262 days
321.0
TCGA-G3-A7M7-01A
65 years, male, white, stage:i, alive, 361 days
320.8
TCGA-BC-A10W-01A
50 years, male, asian, dead, 91 days
306.4
TCGA-G3-AAV3-01A
58 years, female, white, stage:ii, alive, 412 days
293.8
TCGA-DD-AACZ-01A
63 years, female, asian, stage:i, dead, 171 days
291.7
TCGA-FV-A23B-01A
70 years, female, white, stage:ii, dead, 1852 days
275.5
TCGA-DD-A3A3-01A
45 years, male, asian, stage:i, dead, 535 days
275.2
TCGA-RC-A7SH-01A
42 years, male, asian, stage:ii, alive, 468 days
274.3
TCGA-DD-A1ED-01A
68 years, male, white, stage:i, alive, 2301 days
269.0
TCGA-DD-AACL-01A
66 years, female, asian, stage:i, dead, 107 days
268.4
TCGA-G3-A5SJ-01A
59 years, male, white, stage:i, alive, 698 days
266.8
TCGA-G3-A3CK-01A
61 years, male, asian, stage:i, alive, 585 days
265.9
TCGA-DD-A4NH-01A
65 years, female, white, stage:iiib, alive, 917 days
260.7
TCGA-DD-AAD6-01A
66 years, male, asian, stage:iiia, alive, 672 days
257.7
TCGA-CC-5262-01A
67 years, male, asian, stage:iiic, dead, 103 days
256.0
TCGA-DD-A1EL-01A
23 years, male, black or african american, stage:ii, dead, 415 days
251.9
TCGA-DD-AAVV-01A
56 years, male, asian, stage:ii, alive, 2455 days
247.4
TCGA-G3-A25Y-01A
52 years, female, asian, stage:i, dead, 452 days
240.9
TCGA-DD-AADC-01A
53 years, male, asian, stage:i, dead, 425 days
237.2
TCGA-G3-AAV1-01A
51 years, male, asian, stage:iiic, dead, 359 days
229.9
TCGA-DD-AAVX-01A
38 years, male, asian, stage:ii, alive, 1570 days
227.7
TCGA-DD-AADW-01A
48 years, male, asian, stage:i, alive, 587 days
224.5
TCGA-CC-A8HT-01A
74 years, male, asian, stage:iiia, dead, 140 days
223.5
TCGA-DD-A73G-01A
73 years, female, white, stage:i, alive, 3478 days
223.3
TCGA-DD-A4NP-01A
32 years, male, white, stage:i, alive, 3308 days
223.2
TCGA-ED-A8O6-01A
50 years, female, asian, stage:iiia, dead, 56 days
218.9
TCGA-DD-A4NF-01A
72 years, male, white, stage:i, alive, 942 days
217.3
TCGA-CC-5264-01A
71 years, male, asian, stage:iiia, dead, 102 days
217.0
TCGA-DD-AACP-01A
65 years, male, asian, stage:i, alive, 415 days
216.4
TCGA-DD-AADQ-01A
59 years, male, asian, stage:ii, alive, 436 days
211.6
TCGA-G3-A7M9-01A
70 years, male, white, stage:iiib, dead, 56 days
203.4
TCGA-EP-A2KA-01A
52 years, female, white, stage:iiia, dead, 627 days
190.3
TCGA-DD-AACB-01A
74 years, female, asian, stage:i, alive, 2324 days
187.4
TCGA-DD-AAVR-01A
44 years, male, asian, stage:i, alive, 2513 days
182.0
TCGA-GJ-A3OU-01A
59 years, male, white, stage:i, alive, 879 days
178.9
TCGA-DD-A113-01A
55 years, female, white, stage:ii, alive, 2425 days
170.2
TCGA-FV-A3R3-01A
38 years, female, white, stage:i, dead, 366 days
169.8
TCGA-ED-A459-01A
47 years, male, asian, stage:ii, alive, 910 days
166.7
TCGA-ZP-A9D2-01A
51 years, male, white, dead, 765 days
163.8
TCGA-DD-AAVP-01A
48 years, male, asian, stage:i, alive, 2752 days
162.5
TCGA-CC-A7IG-01A
47 years, male, asian, stage:ii, dead, 299 days
160.8
TCGA-UB-A7MA-01A
62 years, female, white, stage:ii, alive, 848 days
159.0
TCGA-K7-AAU7-01A
61 years, male, white, stage:ii, alive, 359 days
157.0
TCGA-KR-A7K7-01A
61 years, female, white, stage:ii, alive, 951 days
155.3
TCGA-ZP-A9D1-01A
56 years, female, white, alive, 21 days
154.2
TCGA-BC-A10U-01A
69 years, male, white, dead, 837 days
150.8
TCGA-DD-A1EE-01A
73 years, male, white, stage:iiia, dead, 349 days
150.0
TCGA-DD-AACI-01A
69 years, male, asian, stage:ii, alive, 1618 days
144.2
TCGA-FV-A4ZQ-01A
52 years, male, white, stage:i, alive, 12 days
144.0
TCGA-BC-A3KG-01A
68 years, female, white, stage:ii, alive, 680 days
143.2
TCGA-RG-A7D4-01A
69 years, male, black or african american, stage:ii, alive, 1098 days
142.7
TCGA-RC-A6M6-01A
75 years, male, white, stage:ii, alive, 9 days
142.2
TCGA-DD-A1EA-01A
68 years, male, asian, stage:ii, alive, 2415 days
135.4
TCGA-DD-A4NG-01A
77 years, male, white, stage:iiia, dead, 802 days
133.5
TCGA-WQ-A9G7-01A
female, white, alive, 30 days
131.0
TCGA-DD-A114-01A
42 years, male, black or african american, stage:ii, dead, 1149 days
130.1
TCGA-DD-AAD1-01A
51 years, female, asian, stage:i, alive, 564 days
128.3
TCGA-G3-A7M6-01A
60 years, female, white, stage:i, alive, 632 days
126.3
TCGA-DD-A73E-01A
66 years, male, white, stage:i, alive, 44 days
124.9
TCGA-YA-A8S7-01A
69 years, male, white, stage:iiia, dead, 412 days
123.9
TCGA-DD-AADD-01A
51 years, male, asian, stage:i, alive, 1231 days
122.8
TCGA-DD-A73C-01A
65 years, female, white, stage:iiia, alive, 701 days
122.5
TCGA-DD-A39W-01A
29 years, female, white, stage:iii, dead, 827 days
110.1
TCGA-DD-AADY-01A
55 years, female, asian, stage:i, alive, 555 days
108.9
TCGA-DD-A4NQ-01A
60 years, male, white, stage:ii, dead, 373 days
108.4
TCGA-DD-AACA-01A
65 years, male, asian, stage:i, alive, 2301 days
107.3
TCGA-2Y-A9H2-01A
64 years, female, white, stage:i, alive, 1731 days
106.8
TCGA-CC-5261-01A
44 years, male, asian, stage:ii, dead, 97 days
105.6
TCGA-CC-A3MB-01A
36 years, male, asian, stage:iiia, dead, 315 days
103.3
TCGA-DD-A3A9-01A
64 years, female, white, stage:ivb, dead, 931 days
103.1
TCGA-ED-A7PZ-01A
61 years, male, asian, stage:ii, alive, 6 days
102.7
TCGA-G3-A25T-01A
45 years, female, white, stage:iiia, alive, 1553 days
102.3
TCGA-G3-A3CG-01A
80 years, male, white, stage:i, alive, 673 days
99.6
TCGA-UB-A7MF-01A
57 years, male, white, stage:iiia, dead, 214 days
99.2
TCGA-CC-A7II-01A
55 years, male, asian, stage:iiia, alive, 399 days
98.2
TCGA-BC-A112-01A
80 years, male, white, dead, 153 days
92.8
TCGA-CC-A3MA-01A
61 years, male, asian, stage:iiia, dead, 303 days
90.8
TCGA-DD-AACD-01A
48 years, male, asian, stage:i, dead, 381 days
88.8
TCGA-BC-4072-01B
74 years, female, white, stage:iiia, dead, 1490 days
87.9
TCGA-DD-AACH-01A
69 years, male, asian, stage:ii, dead, 195 days
83.5
TCGA-ED-A5KG-01A
60 years, female, asian, stage:ii, alive, 854 days
81.1
TCGA-DD-AAE0-01A
45 years, female, asian, stage:iiia, alive, 555 days
70.7
TCGA-ED-A97K-01A
54 years, male, asian, stage:iiia, alive, 6 days
65.9
TCGA-G3-A25X-01A
73 years, male, asian, stage:ii, alive, 1779 days
61.9
TCGA-DD-A1EH-01A
23 years, male, white, stage:iii, alive, 1495 days
61.8
TCGA-DD-AACX-01A
66 years, male, asian, stage:ii, alive, 170 days
61.7
TCGA-CC-5263-01A
35 years, male, asian, stage:iiia, dead, 129 days
58.1
TCGA-CC-A5UD-01A
45 years, male, asian, stage:iiia, dead, 304 days
54.0
TCGA-CC-A8HV-01A
51 years, female, asian, stage:ii, dead, 279 days
50.2
TCGA-XR-A8TE-01A
16 years, male, white, stage:iiia, alive, 925 days
44.1
TCGA-5R-AA1D-01A
17 years, female, white, stage:iiia, alive, 449 days
43.1
TCGA-RC-A6M5-01A
20 years, female, white, stage:iva, alive, 15 days
34.3
TCGA-DD-A1EB-01A
72 years, female, stage:i, alive, 2017 days
31.7
TCGA-5C-A9VG-01A
58 years, male, white, stage:ii, alive, 328 days
30.3
TCGA-DD-A39Z-01A
43 years, female, stage:ii, dead, 601 days
29.7
TCGA-ED-A66Y-01A
51 years, female, asian, stage:iiia, dead, 296 days
26.6
TCGA-BC-A10R-01A
66 years, female, white, dead, 308 days
25.1
TCGA-DD-A3A4-01A
37 years, male, white, stage:iiia, dead, 612 days
24.9
TCGA-DD-AAC8-01A
72 years, male, asian, stage:i, dead, 16 days
22.1
TCGA-G3-AAV7-01A
38 years, male, asian, stage:ii, alive, 361 days
20.8
TCGA-DD-AA3A-01A
81 years, female, white, stage:i, dead, 410 days
18.7
TCGA-DD-A4NB-01A
25 years, male, white, stage:i, alive, 989 days
16.6
TCGA-ED-A7PX-01A
48 years, female, asian, stage:ii, alive, 6 days
16.1
TCGA-DD-AAD5-01A
54 years, male, asian, stage:i, alive, 1345 days
15.5
TCGA-BC-4073-01B
73 years, male, white, stage:iiia, alive, 849 days
10.2
TCGA-FV-A3I0-01A
76 years, female, white, stage:ii, alive, 848 days
7.7
TCGA-CC-A1HT-01A
50 years, male, asian, stage:iiia, dead, 101 days
7.0
TCGA-DD-A4NA-01A
67 years, female, white, stage:iiic, alive, 1008 days
5.7
TCGA-CC-5260-01A
61 years, female, asian, stage:iiic, dead, 87 days
4.6
TCGA-LG-A9QC-01A
48 years, male, white, stage:i, alive, 425 days
4.0
TCGA-MR-A8JO-01A
34 years, male, white, stage:i, alive, 330 days
3.6
TCGA-ED-A82E-01A
60 years, female, asian, stage:iiia, alive, 408 days
2.9
TCGA-DD-A1EC-01A
20 years, female, white, stage:i, alive, 602 days
2.4
TCGA-DD-A3A6-01A
72 years, female, white, stage:ii, dead, 3258 days
2.3
TCGA-BC-A10Q-01A
72 years, female, white, dead, 1135 days
1.5
TCGA-CC-A7IJ-01A
56 years, male, asian, stage:ii, alive, 382 days
0.6
TCGA-WX-AA47-01A
33 years, female, white, stage:iiia, dead, 556 days
0.4
TCGA-CC-A3M9-01A
45 years, male, asian, stage:iiia, dead, 300 days
0.2
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
