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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:86.4 nTPM
HPA:86.4 nTPM
GTEx:85.4 nTPM
FANTOM5:20.1 Scaled Tags Per Million
Pig:67.3 nTPM
Mouse:82.9 nTPM
Allen mouse:4.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 86.4
Sample id Sample description nTPM
Amygdala
nTPM: 86.4
2814 Male, age 76, right hemisphere 89.5
2514 Male, age 75, right hemisphere 89.2
1987 Female, age 91, left hemisphere 87.4
2695 Female, age 67, right hemisphere 83.7
2517 Female, age 94, left hemisphere 82.1
Basal amygdala
nTPM: 79.9
2609 Male, age 75, right hemisphere 87.8
1955 Male, age 76, both hemispheres 82.6
2110 Male, age 80, left hemisphere 80.8
2685 Female, age 94, left hemisphere 78.2
2243 Female, age 91, right hemisphere 75.1
2827 Female, age 67, right hemisphere 75.0
Central amygdala
nTPM: 82.8
1905 Male, age 76, both hemispheres 87.6
2515 Male, age 75, right hemisphere 83.4
2239 Male, age 80, left hemisphere 81.3
2826 Female, age 94, left hemisphere 81.0
2701 Female, age 91, right hemisphere 80.9
Corticomedial amygdala
nTPM: 80.3
2428 Male, age 75, right hemisphere 86.2
2429 Female, age 94, left hemisphere 82.4
2242 Female, age 91, right hemisphere 81.4
2240 Male, age 76, both hemispheres 81.0
2829 Male, age 80, left hemisphere 80.9
2535 Female, age 67, right hemisphere 70.0
Lateral amygdala
nTPM: 80.4
2516 Male, age 75, right hemisphere 88.7
1883 Male, age 76, both hemispheres 87.2
2256 Male, age 80, left hemisphere 79.6
2534 Female, age 94, left hemisphere 77.8
2255 Female, age 91, right hemisphere 75.7
2830 Female, age 67, right hemisphere 73.4
Stria terminalis, bed nucleus
nTPM: 80.5
1974 Female, age 91, both hemispheres 82.1
2201 Male, age 74, unknown 81.5
2486 Female, age 94, both hemispheres 77.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 85.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 85.4
Samples: 152

Max nTPM: 138.7
Min nTPM: 52.4
Std nTPM: 16.1
Median nTPM: 84.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 138.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 138.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 126.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 125.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 120.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 120.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 115.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 115.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 111.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 109.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 109.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 108.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 108.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 107.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 107.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 106.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 106.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 105.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 104.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 103.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 103.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 102.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 101.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 100.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 100.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 99.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 99.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 99.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 98.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 98.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 97.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 97.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 97.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 97.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 96.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 95.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 95.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 95.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 95.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 94.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 93.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 93.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 93.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 92.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 92.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 92.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 91.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 90.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 90.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 90.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 90.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 90.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 89.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 89.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 89.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 89.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 88.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 88.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 88.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 88.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 87.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 87.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 87.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 87.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 86.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 86.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 86.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 86.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 85.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 85.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 85.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 85.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 84.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 84.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 84.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 84.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 84.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 84.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 84.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 83.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 83.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 83.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 83.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 82.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 81.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 81.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 81.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 81.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 81.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 80.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 80.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 79.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 79.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 79.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 79.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 78.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 78.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 78.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 78.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 78.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 77.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 77.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 77.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 76.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 76.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 76.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 75.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 75.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 75.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 74.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 74.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 74.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 74.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 74.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 73.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 73.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 72.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 72.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 72.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 72.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 72.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 72.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 72.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 71.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 71.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 69.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 69.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 69.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 69.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 69.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 68.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 68.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 67.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 67.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 67.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 67.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 66.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 66.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 64.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 64.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 63.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 63.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 63.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 62.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 61.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 60.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 60.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 59.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 58.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 58.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 55.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 52.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 20.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 20.1
FF:10151-102I7 76 years, female 20.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 67.3
Pig sample Sample description nTPM
Amygdala
nTPM: 67.3
Samples: 4

Max nTPM: 81.9
Min nTPM: 53.3
Sample A Female 81.9
Sample B Female 77.1
Sample C Male 56.9
Sample D Male 53.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 82.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 82.9
Samples: 4

Max nTPM: 85.9
Min nTPM: 77.0
Sample A Male 85.7
Sample B Male 85.9
Sample C Female 77.0
Sample D Female 83.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 4.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.6
68667312 Antisense, RP_050201_02_A06, Mouse strain C57BL/6J (56 days, male) 4.6

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