MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:93.3 nTPM
HPA:93.3 nTPM
GTEx:100.6 nTPM
FANTOM5:23.3 Scaled Tags Per Million
Pig:103.7 nTPM
Mouse:109.3 nTPM
Allen mouse:2.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 93.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 89.0
2411 Female, age 72, unknown 96.9
1870 Female, age 42, unknown 94.8
2019 Male, age 18, unknown 91.3
1833 Male, age 53, unknown 91.1
1827 Male, age 72, unknown 88.9
2219 Male, age 76, both hemispheres 88.2
1830 Male, age 51, unknown 88.1
2828 Female, age 72, unknown 85.1
2666 Male, age 74, left hemisphere 83.9
2586 Male, age 75, left hemisphere 81.2
Dorsal raphe nucleus
nTPM: 93.1
1828 Male, age 53, unknown 96.9
2298 Female, age 72, unknown 96.2
2047 Male, age 72, unknown 91.6
2016 Female, age 72, unknown 90.7
2750 Male, age 76, both hemispheres 89.9
Inferior colliculus
nTPM: 90.8
2097 Female, age 72, unknown 94.1
1890 Male, age 53, unknown 92.1
1848 Female, age 42, unknown 90.2
2849 Male, age 72, unknown 86.9
Median raphe nucleus
nTPM: 91.6
2220 Male, age 76, midline 91.6
Pedunculopontine tegmental nucleus
nTPM: 93.3
2334 Male, age 80, both hemispheres 94.7
2338 Male, age 61, both hemispheres 93.8
1921 Female, age 85, both hemispheres 91.5
Periaquaductal grey, anterior
nTPM: 86.6
1947 Male, age 18, unknown 88.5
2502 Female, age 75, unknown 86.3
1795 Male, age 51, unknown 85.1
Periaquaductal grey, dorsal
nTPM: 89.2
2850 Male, age 76, both hemispheres 96.4
1840 Male, age 53, unknown 88.1
2464 Female, age 72, unknown 87.1
1831 Male, age 72, unknown 85.1
Periaquaductal grey, lateral
nTPM: 86.8
2053 Male, age 18, unknown 87.7
2140 Male, age 76, both hemispheres 86.7
2272 Male, age 74, both hemispheres 86.1
Pretectal area
nTPM: 88.3
2224 Female, age 72, unknown 92.5
1817 Female, age 42, unknown 92.3
1815 Male, age 53, unknown 91.4
2667 Female, age 75, unknown 91.0
1816 Male, age 51, unknown 90.9
2273 Male, age 74, both hemispheres 90.8
2007 Male, age 72, unknown 87.6
2825 Male, age 18, unknown 87.2
2316 Male, age 76, right hemisphere 86.4
1944 Female, age 72, unknown 85.1
2407 Male, age 75, both hemispheres 76.1
Red nucleus
nTPM: 91.3
1821 Female, age 72, unknown 107.0
2725 Female, age 75, unknown 95.8
1954 Female, age 42, unknown 94.3
2823 Male, age 76, right hemisphere 93.5
1904 Male, age 53, unknown 93.1
1865 Male, age 51, unknown 92.5
2503 Female, age 72, unknown 92.2
2769 Male, age 72, unknown 92.0
2227 Male, age 72, unknown 91.2
2785 Male, age 18, unknown 88.4
2588 Male, age 74, left hemisphere 79.9
2584 Male, age 75, left hemisphere 75.4
Substantia nigra
nTPM: 92.1
1916 Female, age 42, unknown 99.4
1851 Male, age 51, unknown 97.1
2409 Female, age 72, unknown 96.2
2241 Male, age 72, unknown 93.7
2699 Male, age 18, unknown 93.2
1889 Female, age 72, unknown 92.0
2665 Male, age 74, both hemispheres 89.5
1941 Male, age 53, unknown 87.6
2590 Female, age 75, unknown 87.6
2583 Male, age 75, right hemisphere 84.2
Superior colliculus
nTPM: 87.5
1895 Male, age 76, right hemisphere 94.9
1913 Female, age 42, unknown 94.1
2587 Male, age 74, left hemisphere 93.8
1995 Male, age 72, unknown 92.7
2087 Female, age 72, unknown 85.1
1796 Male, age 53, unknown 84.9
1839 Male, age 51, unknown 84.9
2668 Female, age 75, unknown 84.2
2261 Male, age 18, unknown 83.7
2664 Male, age 75, both hemispheres 76.8
Ventral tegmental area
nTPM: 92.3
2410 Female, age 72, unknown 98.3
2218 Male, age 76, both hemispheres 94.6
1915 Female, age 42, unknown 94.2
2223 Female, age 72, unknown 92.9
1942 Male, age 51, unknown 87.1
2021 Male, age 53, unknown 86.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 100.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 100.6
Samples: 139

Max nTPM: 175.2
Min nTPM: 57.3
Std nTPM: 18.9
Median nTPM: 100.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 175.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 147.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 145.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 141.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 139.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 135.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 135.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 132.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 131.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 129.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 129.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.3
FF:10158-103A5 76 years, female 23.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 103.7
Pig sample Sample description nTPM
Midbrain
nTPM: 99.4
Samples: 4

Max nTPM: 131.3
Min nTPM: 74.2
Sample A Female 131.3
Sample B Female 105.9
Sample C Male 74.2
Sample D Male 86.0
Periaqueductal gray
nTPM: 94.2
Samples: 3

Max nTPM: 97.3
Min nTPM: 90.0
Sample B Female 95.2
Sample C Male 97.3
Sample D Male 90.0
Substantia nigra
nTPM: 103.7
Samples: 4

Max nTPM: 128.0
Min nTPM: 91.1
Sample A Female 128.0
Sample B Female 91.5
Sample C Male 104.1
Sample D Male 91.1
Superior colliculi
nTPM: 93.5
Samples: 4

Max nTPM: 108.2
Min nTPM: 84.2
Sample A Female 108.2
Sample B Female 84.2
Sample C Male 88.4
Sample D Male 93.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 109.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 109.3
Samples: 4

Max nTPM: 113.6
Min nTPM: 105.4
Sample A Male 107.4
Sample B Male 105.4
Sample C Female 110.9
Sample D Female 113.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.8
68667312 Antisense, RP_050201_02_A06, Mouse strain C57BL/6J (56 days, male) 2.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.