MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:52.6 nTPM
HPA:52.6 nTPM
GTEx:48.2 nTPM
FANTOM5:138.2 Scaled Tags Per Million
Pig:45.3 nTPM
Mouse:87.9 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 52.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.5
1870 Female, age 42, unknown 51.6
1833 Male, age 53, unknown 50.8
1830 Male, age 51, unknown 49.6
2019 Male, age 18, unknown 49.3
2411 Female, age 72, unknown 49.3
1827 Male, age 72, unknown 47.9
2586 Male, age 75, left hemisphere 47.9
2828 Female, age 72, unknown 46.4
2219 Male, age 76, both hemispheres 46.1
2666 Male, age 74, left hemisphere 45.7
Dorsal raphe nucleus
nTPM: 48.5
2750 Male, age 76, both hemispheres 51.0
2016 Female, age 72, unknown 49.7
1828 Male, age 53, unknown 48.5
2047 Male, age 72, unknown 46.8
2298 Female, age 72, unknown 46.5
Inferior colliculus
nTPM: 49.6
2097 Female, age 72, unknown 50.7
1848 Female, age 42, unknown 50.2
2849 Male, age 72, unknown 48.8
1890 Male, age 53, unknown 48.5
Median raphe nucleus
nTPM: 48.4
2220 Male, age 76, midline 48.4
Pedunculopontine tegmental nucleus
nTPM: 48.6
1921 Female, age 85, both hemispheres 49.2
2334 Male, age 80, both hemispheres 48.9
2338 Male, age 61, both hemispheres 47.8
Periaquaductal grey, anterior
nTPM: 47.7
2502 Female, age 75, unknown 49.7
1947 Male, age 18, unknown 49.2
1795 Male, age 51, unknown 44.4
Periaquaductal grey, dorsal
nTPM: 48.2
1840 Male, age 53, unknown 50.4
2850 Male, age 76, both hemispheres 48.2
2464 Female, age 72, unknown 47.2
1831 Male, age 72, unknown 47.0
Periaquaductal grey, lateral
nTPM: 46.6
2053 Male, age 18, unknown 48.7
2140 Male, age 76, both hemispheres 46.8
2272 Male, age 74, both hemispheres 44.1
Pretectal area
nTPM: 47.9
1817 Female, age 42, unknown 50.1
1816 Male, age 51, unknown 49.6
1944 Female, age 72, unknown 49.6
1815 Male, age 53, unknown 49.2
2667 Female, age 75, unknown 48.4
2273 Male, age 74, both hemispheres 47.8
2224 Female, age 72, unknown 47.4
2825 Male, age 18, unknown 47.3
2007 Male, age 72, unknown 46.6
2316 Male, age 76, right hemisphere 46.5
2407 Male, age 75, both hemispheres 44.9
Red nucleus
nTPM: 52.6
1821 Female, age 72, unknown 59.1
1954 Female, age 42, unknown 58.9
1865 Male, age 51, unknown 54.9
2503 Female, age 72, unknown 54.2
1904 Male, age 53, unknown 53.8
2725 Female, age 75, unknown 52.9
2823 Male, age 76, right hemisphere 52.5
2227 Male, age 72, unknown 52.3
2588 Male, age 74, left hemisphere 50.2
2769 Male, age 72, unknown 50.0
2785 Male, age 18, unknown 47.9
2584 Male, age 75, left hemisphere 45.1
Substantia nigra
nTPM: 51.1
2241 Male, age 72, unknown 59.0
2409 Female, age 72, unknown 56.7
1889 Female, age 72, unknown 51.1
2590 Female, age 75, unknown 50.9
1851 Male, age 51, unknown 50.3
1916 Female, age 42, unknown 50.0
2699 Male, age 18, unknown 49.9
2583 Male, age 75, right hemisphere 49.0
1941 Male, age 53, unknown 47.5
2665 Male, age 74, both hemispheres 46.3
Superior colliculus
nTPM: 48.3
1895 Male, age 76, right hemisphere 50.6
2587 Male, age 74, left hemisphere 49.9
1913 Female, age 42, unknown 49.6
1995 Male, age 72, unknown 49.5
2261 Male, age 18, unknown 49.0
1839 Male, age 51, unknown 48.9
2087 Female, age 72, unknown 47.2
2664 Male, age 75, both hemispheres 46.7
1796 Male, age 53, unknown 46.4
2668 Female, age 75, unknown 45.4
Ventral tegmental area
nTPM: 48.6
2410 Female, age 72, unknown 50.1
1915 Female, age 42, unknown 49.9
2218 Male, age 76, both hemispheres 49.2
2021 Male, age 53, unknown 47.8
2223 Female, age 72, unknown 47.5
1942 Male, age 51, unknown 47.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 48.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.2
Samples: 139

Max nTPM: 79.0
Min nTPM: 27.1
Std nTPM: 9.4
Median nTPM: 46.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 79.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 74.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 73.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 72.6
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 65.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 64.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 63.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 63.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 63.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 62.8
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 62.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 138.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 138.2
FF:10158-103A5 76 years, female 138.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 45.3
Pig sample Sample description nTPM
Midbrain
nTPM: 44.7
Samples: 4

Max nTPM: 55.2
Min nTPM: 36.0
Sample A Female 55.2
Sample B Female 45.1
Sample C Male 42.6
Sample D Male 36.0
Periaqueductal gray
nTPM: 41.0
Samples: 3

Max nTPM: 42.1
Min nTPM: 40.2
Sample B Female 42.1
Sample C Male 40.6
Sample D Male 40.2
Substantia nigra
nTPM: 42.2
Samples: 4

Max nTPM: 49.2
Min nTPM: 35.9
Sample A Female 49.2
Sample B Female 42.4
Sample C Male 41.2
Sample D Male 35.9
Superior colliculi
nTPM: 45.3
Samples: 4

Max nTPM: 52.6
Min nTPM: 39.4
Sample A Female 47.8
Sample B Female 52.6
Sample C Male 41.3
Sample D Male 39.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 87.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 87.9
Samples: 4

Max nTPM: 92.2
Min nTPM: 83.8
Sample A Male 84.9
Sample B Male 83.8
Sample C Female 90.8
Sample D Female 92.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.