MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:180.1 nTPM
HPA:180.1 nTPM
GTEx:188.5 nTPM
FANTOM5:138.8 Scaled Tags Per Million
Mouse:263.9 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 180.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 167.5
2019 Male, age 18, unknown 179.9
2411 Female, age 72, unknown 174.5
2219 Male, age 76, both hemispheres 171.6
1827 Male, age 72, unknown 169.3
1870 Female, age 42, unknown 167.6
2666 Male, age 74, left hemisphere 167.6
2828 Female, age 72, unknown 165.7
1830 Male, age 51, unknown 165.0
1833 Male, age 53, unknown 164.5
2586 Male, age 75, left hemisphere 149.2
Dorsal raphe nucleus
nTPM: 173.8
2298 Female, age 72, unknown 182.0
2750 Male, age 76, both hemispheres 175.3
2047 Male, age 72, unknown 174.8
1828 Male, age 53, unknown 172.9
2016 Female, age 72, unknown 164.0
Inferior colliculus
nTPM: 167.5
2097 Female, age 72, unknown 174.9
1890 Male, age 53, unknown 168.3
1848 Female, age 42, unknown 165.8
2849 Male, age 72, unknown 161.1
Median raphe nucleus
nTPM: 178.8
2220 Male, age 76, midline 178.8
Pedunculopontine tegmental nucleus
nTPM: 177.7
2338 Male, age 61, both hemispheres 180.0
2334 Male, age 80, both hemispheres 178.6
1921 Female, age 85, both hemispheres 174.5
Periaquaductal grey, anterior
nTPM: 173.8
2502 Female, age 75, unknown 178.2
1947 Male, age 18, unknown 172.1
1795 Male, age 51, unknown 171.0
Periaquaductal grey, dorsal
nTPM: 165.4
2850 Male, age 76, both hemispheres 168.9
1840 Male, age 53, unknown 165.3
2464 Female, age 72, unknown 165.3
1831 Male, age 72, unknown 162.0
Periaquaductal grey, lateral
nTPM: 170.0
2272 Male, age 74, both hemispheres 181.7
2140 Male, age 76, both hemispheres 165.3
2053 Male, age 18, unknown 163.0
Pretectal area
nTPM: 171.7
1817 Female, age 42, unknown 181.2
1944 Female, age 72, unknown 177.7
2007 Male, age 72, unknown 177.6
1816 Male, age 51, unknown 177.3
2273 Male, age 74, both hemispheres 176.1
1815 Male, age 53, unknown 173.7
2224 Female, age 72, unknown 173.7
2667 Female, age 75, unknown 169.0
2825 Male, age 18, unknown 163.7
2316 Male, age 76, right hemisphere 163.5
2407 Male, age 75, both hemispheres 155.5
Red nucleus
nTPM: 168.3
1821 Female, age 72, unknown 182.2
1954 Female, age 42, unknown 171.9
2785 Male, age 18, unknown 170.5
2503 Female, age 72, unknown 169.3
2725 Female, age 75, unknown 169.0
1865 Male, age 51, unknown 168.8
1904 Male, age 53, unknown 168.8
2823 Male, age 76, right hemisphere 168.2
2769 Male, age 72, unknown 166.8
2227 Male, age 72, unknown 165.0
2588 Male, age 74, left hemisphere 164.2
2584 Male, age 75, left hemisphere 155.1
Substantia nigra
nTPM: 180.1
1916 Female, age 42, unknown 198.9
2241 Male, age 72, unknown 193.3
2409 Female, age 72, unknown 189.6
1851 Male, age 51, unknown 184.6
1889 Female, age 72, unknown 180.1
1941 Male, age 53, unknown 179.5
2665 Male, age 74, both hemispheres 176.6
2699 Male, age 18, unknown 172.6
2590 Female, age 75, unknown 168.3
2583 Male, age 75, right hemisphere 157.3
Superior colliculus
nTPM: 166.1
2587 Male, age 74, left hemisphere 172.3
2087 Female, age 72, unknown 171.6
2668 Female, age 75, unknown 171.1
2261 Male, age 18, unknown 170.8
1796 Male, age 53, unknown 168.2
1895 Male, age 76, right hemisphere 167.7
1839 Male, age 51, unknown 164.9
1913 Female, age 42, unknown 163.8
1995 Male, age 72, unknown 160.9
2664 Male, age 75, both hemispheres 149.4
Ventral tegmental area
nTPM: 176.3
2218 Male, age 76, both hemispheres 184.6
2410 Female, age 72, unknown 183.6
1915 Female, age 42, unknown 181.0
2223 Female, age 72, unknown 170.9
2021 Male, age 53, unknown 169.2
1942 Male, age 51, unknown 168.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 188.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 188.5
Samples: 139

Max nTPM: 297.9
Min nTPM: 113.8
Std nTPM: 42.4
Median nTPM: 179.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 297.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 296.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 295.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 292.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 288.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 288.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 288.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 273.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 269.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 266.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 263.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 138.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 138.8
FF:10158-103A5 76 years, female 138.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 263.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 263.9
Samples: 4

Max nTPM: 285.4
Min nTPM: 251.7
Sample A Male 264.0
Sample B Male 254.6
Sample C Female 285.4
Sample D Female 251.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
70784672 Antisense, RP_050706_01_B05, Mouse strain C57BL/6J (56 days, male) 0.0
Midbrain
Expression energy: 0.0
70784672 Antisense, RP_050706_01_B05, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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