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                                TISSUE PRIMARY DATA PONS AND MEDULLA Show tissue menu
                                ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
                                EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
                                OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
                                SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
                                ANTIBODIES
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                                VALIDATION
                                Dictionary
                                Tissue proteome
                                PONS AND MEDULLA - Expression summary
                                Protein profiling
                                Multiplex tissuei

                                A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

                                Protein expressioni

                                On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

                                Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

                                If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

                                Read more
                                No data
                                RNA expressioni

                                A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

                                The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

                                Scroll down to view mRNA expression data in more detail.
                                Read more
                                Consensus:2.1 nTPM
                                HPA:2.1 nTPM
                                FANTOM5:4.0 Scaled Tags Per Million
                                Pig:1.5 nTPM
                                Mouse:3.7 nTPM
                                Allen mouse:0.2 Expression energy

                                PONS AND MEDULLA - HPA Brain RNA-seq
                                Max nTPM 2.1
                                Sample id Sample description nTPM
                                Anterior cochlear nucleus, ventral
                                nTPM: 1.9
                                1984 Male, age 76, both hemispheres 2.2
                                2188 Female, age 91, both hemispheres 1.9
                                2090 Male, age 80, both hemispheres 1.8
                                2301 Female, age 85, both hemispheres 1.7
                                Area postrema
                                nTPM: 1.5
                                2306 Male, age 80, both hemispheres 1.6
                                2799 Male, age 61, both hemispheres 1.5
                                2054 Male, age 76, both hemispheres 1.4
                                Cuneate nuclei
                                nTPM: 1.6
                                2376 Male, age 61, both hemispheres 1.8
                                2381 Male, age 80, both hemispheres 1.6
                                2131 Male, age 76, both hemispheres 1.5
                                Dorsal cochlear nucleus
                                nTPM: 2.1
                                2802 Male, age 74, right hemisphere 3.6
                                2187 Female, age 91, both hemispheres 2.0
                                2378 Male, age 80, both hemispheres 1.9
                                2370 Male, age 61, both hemispheres 1.8
                                2058 Male, age 76, both hemispheres 1.5
                                Dorsal medullary reticular nucleus
                                nTPM: 1.7
                                2373 Male, age 61, both hemispheres 2.0
                                2040 Female, age 85, both hemispheres 1.7
                                2088 Male, age 76, both hemispheres 1.5
                                Dorsal motor vagal complex
                                nTPM: 1.7
                                2643 Male, age 74, both hemispheres 2.3
                                2797 Male, age 61, both hemispheres 1.9
                                2813 Female, age 72, unknown 1.9
                                2133 Female, age 91, both hemispheres 1.6
                                2807 Female, age 85, both hemispheres 1.6
                                2844 Male, age 55, unknown 1.6
                                2000 Male, age 74, unknown 1.5
                                2185 Male, age 76, both hemispheres 1.5
                                Dorsal tegmental nucleus
                                nTPM: 1.7
                                2326 Male, age 74, both hemispheres 2.1
                                2083 Male, age 80, both hemispheres 1.7
                                1936 Male, age 76, left hemisphere 1.5
                                2358 Male, age 61, both hemispheres 1.5
                                Dorsolateral tegmental area
                                nTPM: 1.9
                                2360 Male, age 74, both hemispheres 2.1
                                2337 Male, age 61, both hemispheres 2.0
                                2751 Female, age 85, both hemispheres 2.0
                                2654 Male, age 80, both hemispheres 1.7
                                2141 Male, age 76, both hemispheres 1.5
                                Gigantocellular reticular nuclei, medullary
                                nTPM: 1.7
                                1876 Female, age 85, both hemispheres 1.9
                                2314 Male, age 61, both hemispheres 1.8
                                2310 Male, age 80, both hemispheres 1.7
                                2387 Female, age 91, both hemispheres 1.6
                                2462 Male, age 74, both hemispheres 1.6
                                2022 Male, age 76, right hemisphere 1.5
                                Gigantocellular reticular nuclei, pars
                                nTPM: 1.7
                                2330 Male, age 80, both hemispheres 1.8
                                2336 Male, age 61, both hemispheres 1.8
                                2706 Male, age 80, both hemispheres 1.8
                                2084 Female, age 85, both hemispheres 1.7
                                2168 Male, age 76, both hemispheres 1.4
                                Inferior olive
                                nTPM: 1.9
                                2563 Male, age 74, both hemispheres 2.2
                                2379 Male, age 80, both hemispheres 2.1
                                2628 Female, age 91, both hemispheres 1.9
                                2085 Female, age 85, both hemispheres 1.8
                                2178 Male, age 61, both hemispheres 1.7
                                Kolliker-Fuse nucleus
                                nTPM: 1.6
                                2163 Male, age 80, both hemispheres 1.7
                                2793 Female, age 91, left hemisphere 1.7
                                2315 Male, age 76, right hemisphere 1.5
                                Lateral lemniscal nuclei
                                nTPM: 1.6
                                2453 Male, age 74, right hemisphere 1.7
                                2320 Female, age 91, left hemisphere 1.6
                                2746 Female, age 85, left hemisphere 1.6
                                2036 Male, age 80, both hemispheres 1.5
                                2169 Male, age 76, both hemispheres 1.5
                                Lateral medullary reticular nucleus
                                nTPM: 1.6
                                2190 Female, age 85, both hemispheres 1.9
                                2374 Male, age 61, both hemispheres 1.8
                                2804 Female, age 91, both hemispheres 1.6
                                2044 Male, age 76, both hemispheres 1.5
                                2852 Male, age 80, both hemispheres 1.5
                                2305 Male, age 74, both hemispheres 1.4
                                Lateral parabrachial nucleus
                                nTPM: 1.7
                                2790 Male, age 61, both hemispheres 2.0
                                2139 Female, age 85, right hemisphere 1.7
                                2013 Male, age 80, both hemispheres 1.6
                                2792 Male, age 76, both hemispheres 1.6
                                Lateral vestibular nucleus
                                nTPM: 1.5
                                2311 Male, age 80, both hemispheres 1.6
                                2184 Male, age 76, both hemispheres 1.5
                                Locus coeruleus
                                nTPM: 1.6
                                2720 Male, age 74, both hemispheres 2.1
                                2014 Male, age 55, unknown 1.6
                                2123 Female, age 91, both hemispheres 1.6
                                2162 Male, age 80, both hemispheres 1.6
                                2317 Female, age 72, unknown 1.5
                                2788 Male, age 74, unknown 1.5
                                1980 Male, age 76, both hemispheres 1.4
                                Medial olivary nucleus
                                nTPM: 1.6
                                2138 Female, age 91, both hemispheres 1.8
                                1943 Male, age 61, both hemispheres 1.6
                                1962 Male, age 76, both hemispheres 1.6
                                2851 Male, age 80, both hemispheres 1.6
                                Medial parabrachial nucleus
                                nTPM: 1.8
                                2463 Female, age 85, right hemisphere 2.1
                                2170 Female, age 91, both hemispheres 2.0
                                2854 Male, age 80, both hemispheres 1.7
                                2156 Male, age 61, both hemispheres 1.6
                                2786 Male, age 76, both hemispheres 1.6
                                Medial periolivary nuclei
                                nTPM: 1.6
                                2458 Female, age 91, both hemispheres 1.7
                                2171 Female, age 85, both hemispheres 1.6
                                2063 Male, age 76, both hemispheres 1.5
                                2081 Male, age 80, both hemispheres 1.5
                                2791 Male, age 74, right hemisphere 1.5
                                Medial vestibular nucleus
                                nTPM: 1.7
                                2803 Female, age 91, both hemispheres 1.9
                                2743 Female, age 85, both hemispheres 1.8
                                2801 Male, age 74, both hemispheres 1.8
                                2624 Male, age 61, both hemispheres 1.7
                                2093 Male, age 80, both hemispheres 1.6
                                2134 Male, age 76, both hemispheres 1.4
                                Motor facial nucleus
                                nTPM: 1.6
                                2697 Female, age 85, both hemispheres 1.9
                                2126 Male, age 61, both hemispheres 1.7
                                2365 Male, age 74, right hemisphere 1.6
                                2795 Female, age 91, both hemispheres 1.6
                                2062 Male, age 76, both hemispheres 1.5
                                2327 Male, age 80, both hemispheres 1.4
                                Motor hypoglossal nucleus
                                nTPM: 1.6
                                2125 Female, age 91, both hemispheres 1.8
                                2132 Female, age 85, both hemispheres 1.8
                                2182 Male, age 80, both hemispheres 1.7
                                2461 Male, age 61, both hemispheres 1.6
                                2277 Male, age 76, both hemispheres 1.4
                                Motor trigeminal nucleus
                                nTPM: 1.7
                                2321 Female, age 91, both hemispheres 2.0
                                2560 Male, age 74, both hemispheres 1.9
                                2335 Male, age 61, both hemispheres 1.8
                                2309 Male, age 76, both hemispheres 1.5
                                2079 Male, age 80, both hemispheres 1.4
                                Nuclei of the trapezoid body
                                nTPM: 1.6
                                2368 Female, age 91, both hemispheres 1.7
                                2735 Female, age 85, both hemispheres 1.7
                                1983 Male, age 76, both hemispheres 1.5
                                2159 Male, age 61, both hemispheres 1.5
                                2166 Male, age 80, both hemispheres 1.4
                                Nucleus ambiguus
                                nTPM: 1.6
                                2096 Female, age 85, both hemispheres 1.7
                                2071 Male, age 76, both hemispheres 1.5
                                Nucleus cuneatus
                                nTPM: 1.7
                                2564 Male, age 74, both hemispheres 2.1
                                2562 Male, age 61, both hemispheres 1.7
                                2380 Male, age 80, both hemispheres 1.6
                                2805 Female, age 91, both hemispheres 1.6
                                2808 Female, age 85, both hemispheres 1.6
                                2100 Male, age 76, both hemispheres 1.4
                                Nucleus gracilis
                                nTPM: 1.6
                                2627 Male, age 74, both hemispheres 1.7
                                2299 Female, age 85, both hemispheres 1.6
                                2382 Male, age 80, both hemispheres 1.6
                                Nucleus raphe magnus
                                nTPM: 1.6
                                2455 Male, age 74, both hemispheres 1.8
                                2172 Female, age 85, both hemispheres 1.6
                                2051 Male, age 76, both hemispheres 1.5
                                2160 Male, age 61, both hemispheres 1.5
                                2328 Male, age 80, both hemispheres 1.5
                                2459 Female, age 91, both hemispheres 1.5
                                Nucleus raphe obscurus
                                nTPM: 1.9
                                2800 Male, age 61, midline 2.1
                                2845 Female, age 85, midline 2.1
                                2142 Male, age 76, midline 1.5
                                Nucleus raphe pallidus
                                nTPM: 1.6
                                2183 Male, age 80, midline 1.8
                                2145 Male, age 76, midline 1.5
                                1924 Male, age 61, midline 1.4
                                Nucleus tractus solitarii
                                nTPM: 1.6
                                2144 Female, age 91, right hemisphere 1.8
                                2307 Male, age 80, both hemispheres 1.6
                                2191 Female, age 85, both hemispheres 1.5
                                2656 Male, age 76, both hemispheres 1.4
                                Paramedian reticular nucleus
                                nTPM: 1.6
                                2052 Male, age 76, both hemispheres 1.8
                                2050 Female, age 85, both hemispheres 1.6
                                2057 Male, age 80, both hemispheres 1.5
                                2313 Male, age 61, both hemispheres 1.5
                                Parvicellular reticular nuclei
                                nTPM: 1.6
                                2095 Male, age 76, both hemispheres 1.6
                                2119 Male, age 80, both hemispheres 1.6
                                2558 Male, age 74, both hemispheres 1.5
                                Parvicellular reticular nuclei, medullary
                                nTPM: 1.8
                                2091 Female, age 85, both hemispheres 2.1
                                2189 Female, age 91, both hemispheres 1.7
                                2181 Male, age 80, left hemisphere 1.6
                                Peritrigeminal nucleus
                                nTPM: 1.5
                                2067 Female, age 85, both hemispheres 1.6
                                2179 Male, age 61, both hemispheres 1.6
                                2136 Male, age 76, both hemispheres 1.5
                                Pontine nuclei
                                nTPM: 1.6
                                2319 Female, age 91, both hemispheres 1.8
                                2454 Male, age 74, left hemisphere 1.7
                                2115 Male, age 80, left hemisphere 1.6
                                2727 Male, age 61, right hemisphere 1.6
                                1863 Male, age 55, unknown 1.5
                                2787 Female, age 85, both hemispheres 1.5
                                1968 Male, age 76, left hemisphere 1.4
                                2109 Female, age 72, unknown 1.4
                                Pontine raphe nucleus
                                nTPM: 1.7
                                2122 Female, age 85, midline 1.8
                                2853 Male, age 76, midline 1.5
                                Posteroventral cochlear nucleus
                                nTPM: 1.8
                                2371 Male, age 61, both hemispheres 2.1
                                2135 Female, age 91, both hemispheres 1.9
                                2341 Male, age 80, both hemispheres 1.8
                                2752 Female, age 85, both hemispheres 1.6
                                2070 Male, age 76, both hemispheres 1.4
                                Prepositus hypoglossal nucleus
                                nTPM: 1.7
                                2855 Female, age 85, right hemisphere 1.9
                                2086 Male, age 80, both hemispheres 1.6
                                Principal sensory trigeminal nucleus
                                nTPM: 1.5
                                2158 Male, age 61, both hemispheres 1.6
                                2367 Female, age 91, left hemisphere 1.6
                                2008 Male, age 80, left hemisphere 1.5
                                2324 Male, age 76, both hemispheres 1.5
                                Reticular pontine nucleus, caudal
                                nTPM: 1.8
                                2559 Male, age 74, both hemispheres 2.4
                                2457 Female, age 91, both hemispheres 1.7
                                2092 Male, age 76, both hemispheres 1.5
                                2332 Male, age 80, right hemisphere 1.4
                                Reticular pontine nucleus, oral
                                nTPM: 1.7
                                2012 Female, age 85, both hemispheres 1.8
                                1939 Male, age 80, both hemispheres 1.7
                                2366 Female, age 91, both hemispheres 1.7
                                2167 Male, age 76, both hemispheres 1.6
                                2361 Male, age 74, both hemispheres 1.5
                                Reticulotegmental nucleus
                                nTPM: 1.9
                                2452 Male, age 74, both hemispheres 2.5
                                2322 Female, age 91, both hemispheres 1.8
                                2333 Male, age 80, both hemispheres 1.8
                                2325 Male, age 76, both hemispheres 1.5
                                Spinal trigeminal nucleus, caudal
                                nTPM: 1.7
                                2390 Female, age 91, both hemispheres 1.8
                                2642 Male, age 74, both hemispheres 1.8
                                2312 Male, age 61, both hemispheres 1.7
                                2308 Male, age 80, both hemispheres 1.5
                                2447 Male, age 76, both hemispheres 1.5
                                Spinal trigeminal nucleus, interpolar
                                nTPM: 1.6
                                2386 Female, age 85, both hemispheres 1.7
                                2389 Female, age 91, both hemispheres 1.7
                                2033 Male, age 80, both hemispheres 1.6
                                2625 Male, age 61, both hemispheres 1.6
                                2066 Male, age 76, right hemisphere 1.5
                                Spinal trigeminal nucleus, oral
                                nTPM: 1.7
                                2164 Male, age 80, both hemispheres 1.7
                                2737 Female, age 85, both hemispheres 1.7
                                1978 Male, age 76, both hemispheres 1.5
                                Spinal vestibular nucleus
                                nTPM: 1.7
                                2384 Male, age 74, both hemispheres 2.2
                                2806 Female, age 85, both hemispheres 1.8
                                2186 Female, age 91, both hemispheres 1.7
                                2796 Male, age 61, both hemispheres 1.7
                                2780 Male, age 80, both hemispheres 1.6
                                2748 Male, age 76, both hemispheres 1.5
                                Subcoeruleus area
                                nTPM: 2.0
                                2451 Male, age 74, both hemispheres 2.7
                                2369 Female, age 85, left hemisphere 2.1
                                2323 Female, age 91, left hemisphere 2.0
                                1958 Male, age 80, both hemispheres 1.7
                                2089 Male, age 76, left hemisphere 1.5
                                Superior olive
                                nTPM: 1.6
                                1875 Female, age 85, both hemispheres 1.7
                                2329 Male, age 80, right hemisphere 1.6
                                2020 Male, age 76, both hemispheres 1.5
                                2364 Male, age 74, right hemisphere 1.5
                                2561 Female, age 91, both hemispheres 1.5
                                Superior vestibular nucleus
                                nTPM: 1.6
                                2383 Male, age 74, both hemispheres 1.7
                                2015 Male, age 80, both hemispheres 1.5
                                2061 Male, age 76, both hemispheres 1.5
                                Ventral medullary reticular nucleus
                                nTPM: 1.8
                                2372 Male, age 61, both hemispheres 2.0
                                2060 Male, age 76, both hemispheres 1.6
                                Ventral periolivary nuclei
                                nTPM: 1.6
                                2130 Female, age 85, both hemispheres 1.7
                                2023 Male, age 76, both hemispheres 1.6
                                2794 Female, age 91, left hemisphere 1.6
                                2165 Male, age 80, both hemispheres 1.5
                                Ventrolateral medulla, A1-C1 cell groups
                                nTPM: 1.7
                                2741 Female, age 85, both hemispheres 1.9
                                2302 Female, age 91, both hemispheres 1.8
                                2118 Male, age 80, both hemispheres 1.7
                                2180 Male, age 61, both hemispheres 1.6
                                1986 Male, age 76, both hemispheres 1.5
                                Ventrolateral tegmental area, A5 NE cell group
                                nTPM: 1.7
                                2449 Male, age 74, both hemispheres 1.8
                                2456 Female, age 91, both hemispheres 1.8
                                2840 Female, age 85, both hemispheres 1.8
                                1959 Male, age 76, both hemispheres 1.6
                                2161 Male, age 80, both hemispheres 1.6
                                2359 Male, age 61, both hemispheres 1.6

                                PONS AND MEDULLA - FANTOM5 CAGEi

                                RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

                                Read more
                                Max Scaled Tags Per Million 4.0
                                FANTOM5 sample id Sample description Scaled Tags Per Million
                                Locus coeruleus
                                Scaled Tags Per Million: 1.0
                                FF:10165-103B3 76 years, female 1.5
                                FF:10182-103D2 60 years, female 0.5
                                Medulla oblongata
                                Scaled Tags Per Million: 3.3
                                FF:10038-101F2 18-64 years, mixed 7.3
                                FF:10155-103A2 76 years, female 1.9
                                FF:10174-103C3 60 years, female 0.7
                                Pons
                                Scaled Tags Per Million: 4.0
                                FF:10033-101E6 18-54 years, mixed 4.0

                                PONS AND MEDULLA - Pig RNA-seqi

                                RNA-seq data obtained from pig brain is reported as nTPM .

                                Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
                                Read more
                                Average nTPM 1.5
                                Pig sample Sample description nTPM
                                1.21.21.31.11.20.00.20.40.60.81.01.21.41.6
                                1.21.21.31.11.20.00.20.40.60.81.01.21.41.6
                                Medulla oblongata
                                nTPM: 1.3
                                Samples: 4

                                Max nTPM: 1.6
                                Min nTPM: 1.1
                                Sample A Female 1.2
                                Sample B Female 1.2
                                Sample C Male 1.1
                                Sample D Male 1.6
                                1.01.11.60.91.20.00.20.40.60.81.01.21.41.61.82.02.22.42.62.83.0
                                1.01.11.60.91.20.00.20.40.60.81.01.21.41.61.82.02.22.42.62.83.0
                                Pons
                                nTPM: 1.5
                                Samples: 4

                                Max nTPM: 3.0
                                Min nTPM: 0.9
                                Sample A Female 3.0
                                Sample B Female 1.2
                                Sample C Male 1.0
                                Sample D Male 0.9

                                PONS AND MEDULLA - Mouse RNA-seqi

                                RNA-seq data obtained from mouse brain is reported as nTPM .

                                Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
                                Read more
                                Average nTPM 3.7
                                Mouse sample Sample description nTPM
                                3.53.63.83.34.10.00.51.01.52.02.53.03.54.0
                                3.53.63.83.34.10.00.51.01.52.02.53.03.54.0
                                Pons and medulla
                                nTPM: 3.7
                                Samples: 4

                                Max nTPM: 4.1
                                Min nTPM: 3.3
                                Sample A Male 4.1
                                Sample B Male 3.7
                                Sample C Female 3.5
                                Sample D Female 3.3

                                PONS AND MEDULLA - Allen Mouse ISHi

                                In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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                                Max Expression energy 0.2
                                Allen experiment id Experiment description Expression energy
                                Medulla oblongata
                                Expression energy: 0.2
                                76115726 Antisense, RP_060620_02_B05, Mouse strain C57BL/6J (56 days, male) 0.3
                                71380950 Antisense, RP_050426_01_F12, Mouse strain C57BL/6J (56 days, male) 0.1
                                Pons
                                Expression energy: 0.2
                                76115726 Antisense, RP_060620_02_B05, Mouse strain C57BL/6J (56 days, male) 0.3
                                71380950 Antisense, RP_050426_01_F12, Mouse strain C57BL/6J (56 days, male) 0.1

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