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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:167.5 nTPM
HPA:167.5 nTPM
GTEx:154.8 nTPM
FANTOM5:598.1 Scaled Tags Per Million
Pig:249.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 167.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 150.1
2565 Male, age 75, midline 169.5
2194 Female, age 79, both hemispheres 159.2
2048 Male, age 55, midline 152.4
1981 Female, age 72, midline 137.7
2816 Male, age 47, midline 131.7
Cervical spinal cord, dorsal horn
nTPM: 132.1
2296 Male, age 66, both hemispheres 144.4
2069 Male, age 47, both hemispheres 144.2
2173 Female, age 72, unknown 144.1
2297 Male, age 75, both hemispheres 127.3
1877 Male, age 55, unknown 120.7
2721 Male, age 90, both hemispheres 112.0
Cervical spinal cord, ventral horn
nTPM: 167.5
2480 Male, age 75, both hemispheres 219.3
2295 Male, age 66, both hemispheres 176.9
2809 Male, age 90, both hemispheres 175.1
2068 Male, age 55, unknown 155.6
2820 Female, age 79, both hemispheres 143.7
2098 Female, age 72, unknown 134.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 154.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 154.8
Samples: 159

Max nTPM: 342.8
Min nTPM: 97.1
Std nTPM: 37.2
Median nTPM: 147.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 342.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 337.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 244.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 241.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 234.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 234.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 225.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 220.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 216.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 209.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 205.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 203.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 202.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 200.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 200.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 200.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 197.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 195.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 194.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 194.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 193.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 193.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 190.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 188.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 185.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 185.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 185.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 184.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 181.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 180.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 180.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 179.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 179.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 179.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 179.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 178.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 177.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 176.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 176.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 175.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 175.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 174.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 171.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 170.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 167.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 167.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 167.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 166.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 166.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 165.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 164.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 164.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 163.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 163.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 162.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 161.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 161.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 160.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 159.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 159.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 157.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 156.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 156.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 156.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 155.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 155.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 155.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 154.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 153.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 153.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 153.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 152.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 151.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 151.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 151.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 150.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 150.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 149.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 147.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 147.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 145.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 145.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 145.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 145.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 144.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 143.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 142.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 141.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 141.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 141.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 140.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 139.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 138.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 138.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 137.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 137.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 137.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 137.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 136.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 136.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 136.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 135.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 135.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 135.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 133.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 133.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 133.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 133.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 133.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 132.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 132.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 132.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 132.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 132.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 131.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 131.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 131.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 131.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 131.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 130.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 130.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 130.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 129.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 129.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 129.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 127.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 127.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 126.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 126.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 126.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 125.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 125.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 123.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 123.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 120.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 120.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 120.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 119.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 119.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 118.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 118.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 118.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 116.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 116.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 115.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 115.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 114.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 113.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 112.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 111.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 109.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 108.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 108.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 108.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 106.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 105.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 105.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 102.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 97.1
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 598.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 598.1
FF:10181-103D1 60 years, female 767.9
FF:10159-103A6 76 years, female 428.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 249.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 233.1
Samples: 4

Max nTPM: 250.4
Min nTPM: 216.1
Sample A Female 240.7
Sample B Female 225.1
Sample C Male 216.1
Sample D Male 250.4
Ventral spinal cord
nTPM: 250.0
Samples: 4

Max nTPM: 288.1
Min nTPM: 233.1
Sample A Female 243.1
Sample B Female 233.1
Sample C Male 235.5
Sample D Male 288.1

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