MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:155.4 nTPM
HPA:155.4 nTPM
GTEx:114.7 nTPM
FANTOM5:33.2 Scaled Tags Per Million
Pig:95.2 nTPM
Mouse:175.6 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 155.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 147.0
2019 Male, age 18, unknown 157.9
2411 Female, age 72, unknown 153.0
1827 Male, age 72, unknown 148.7
2219 Male, age 76, both hemispheres 148.2
1870 Female, age 42, unknown 148.0
1833 Male, age 53, unknown 145.3
2666 Male, age 74, left hemisphere 144.7
1830 Male, age 51, unknown 143.0
2828 Female, age 72, unknown 141.3
2586 Male, age 75, left hemisphere 139.9
Dorsal raphe nucleus
nTPM: 151.6
2298 Female, age 72, unknown 158.7
1828 Male, age 53, unknown 153.7
2750 Male, age 76, both hemispheres 150.2
2047 Male, age 72, unknown 148.4
2016 Female, age 72, unknown 147.2
Inferior colliculus
nTPM: 149.2
2097 Female, age 72, unknown 156.9
1890 Male, age 53, unknown 154.3
1848 Female, age 42, unknown 144.1
2849 Male, age 72, unknown 141.3
Median raphe nucleus
nTPM: 149.6
2220 Male, age 76, midline 149.6
Pedunculopontine tegmental nucleus
nTPM: 152.3
2334 Male, age 80, both hemispheres 153.4
2338 Male, age 61, both hemispheres 152.1
1921 Female, age 85, both hemispheres 151.4
Periaquaductal grey, anterior
nTPM: 146.5
1947 Male, age 18, unknown 148.0
1795 Male, age 51, unknown 146.4
2502 Female, age 75, unknown 145.1
Periaquaductal grey, dorsal
nTPM: 144.9
2850 Male, age 76, both hemispheres 147.3
2464 Female, age 72, unknown 145.2
1840 Male, age 53, unknown 143.8
1831 Male, age 72, unknown 143.4
Periaquaductal grey, lateral
nTPM: 144.2
2272 Male, age 74, both hemispheres 146.4
2053 Male, age 18, unknown 144.5
2140 Male, age 76, both hemispheres 141.6
Pretectal area
nTPM: 154.4
2667 Female, age 75, unknown 163.9
2007 Male, age 72, unknown 163.1
1816 Male, age 51, unknown 162.1
1817 Female, age 42, unknown 161.3
1944 Female, age 72, unknown 158.1
1815 Male, age 53, unknown 156.8
2224 Female, age 72, unknown 150.8
2273 Male, age 74, both hemispheres 150.8
2316 Male, age 76, right hemisphere 146.4
2825 Male, age 18, unknown 142.7
2407 Male, age 75, both hemispheres 142.2
Red nucleus
nTPM: 151.0
1821 Female, age 72, unknown 169.8
2823 Male, age 76, right hemisphere 155.2
1954 Female, age 42, unknown 154.1
1865 Male, age 51, unknown 152.9
2785 Male, age 18, unknown 150.9
1904 Male, age 53, unknown 150.1
2503 Female, age 72, unknown 149.5
2769 Male, age 72, unknown 149.5
2227 Male, age 72, unknown 148.9
2725 Female, age 75, unknown 146.9
2588 Male, age 74, left hemisphere 143.1
2584 Male, age 75, left hemisphere 140.5
Substantia nigra
nTPM: 155.4
1916 Female, age 42, unknown 166.2
2241 Male, age 72, unknown 165.9
1851 Male, age 51, unknown 159.6
1889 Female, age 72, unknown 159.6
2409 Female, age 72, unknown 158.8
1941 Male, age 53, unknown 154.6
2590 Female, age 75, unknown 150.1
2699 Male, age 18, unknown 150.1
2665 Male, age 74, both hemispheres 146.8
2583 Male, age 75, right hemisphere 142.0
Superior colliculus
nTPM: 147.7
2087 Female, age 72, unknown 154.5
1895 Male, age 76, right hemisphere 151.7
2587 Male, age 74, left hemisphere 151.5
2261 Male, age 18, unknown 149.6
2668 Female, age 75, unknown 148.5
1796 Male, age 53, unknown 146.4
1913 Female, age 42, unknown 145.4
1995 Male, age 72, unknown 144.8
1839 Male, age 51, unknown 144.2
2664 Male, age 75, both hemispheres 140.3
Ventral tegmental area
nTPM: 151.2
1915 Female, age 42, unknown 158.2
2218 Male, age 76, both hemispheres 155.5
2410 Female, age 72, unknown 155.0
2223 Female, age 72, unknown 148.4
1942 Male, age 51, unknown 145.6
2021 Male, age 53, unknown 144.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 114.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 114.7
Samples: 139

Max nTPM: 227.9
Min nTPM: 68.1
Std nTPM: 29.6
Median nTPM: 110.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 227.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 212.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 203.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 194.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 182.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 175.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 170.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 169.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 168.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 160.6
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 157.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.2
FF:10158-103A5 76 years, female 33.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 95.2
Pig sample Sample description nTPM
Midbrain
nTPM: 91.7
Samples: 4

Max nTPM: 97.8
Min nTPM: 86.2
Sample A Female 97.8
Sample B Female 92.2
Sample C Male 86.2
Sample D Male 90.6
Periaqueductal gray
nTPM: 75.3
Samples: 3

Max nTPM: 82.6
Min nTPM: 69.2
Sample B Female 74.0
Sample C Male 82.6
Sample D Male 69.2
Substantia nigra
nTPM: 78.2
Samples: 4

Max nTPM: 103.9
Min nTPM: 62.2
Sample A Female 103.9
Sample B Female 62.2
Sample C Male 82.8
Sample D Male 63.7
Superior colliculi
nTPM: 95.3
Samples: 4

Max nTPM: 106.8
Min nTPM: 68.7
Sample A Female 106.4
Sample B Female 68.7
Sample C Male 106.8
Sample D Male 99.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 175.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 175.6
Samples: 4

Max nTPM: 183.1
Min nTPM: 167.6
Sample A Male 167.6
Sample B Male 183.1
Sample C Female 168.9
Sample D Female 182.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
70473927 Antisense, RP_050614_04_E11, Mouse strain C57BL/6J (56 days, male) 1.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.