MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:39.9 nTPM
HPA:39.9 nTPM
GTEx:33.0 nTPM
FANTOM5:169.5 Scaled Tags Per Million
Mouse:22.1 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.7
1870 Female, age 42, unknown 41.4
2828 Female, age 72, unknown 39.8
1830 Male, age 51, unknown 35.8
1833 Male, age 53, unknown 35.8
2019 Male, age 18, unknown 33.4
2586 Male, age 75, left hemisphere 32.8
2411 Female, age 72, unknown 31.5
1827 Male, age 72, unknown 30.7
2219 Male, age 76, both hemispheres 28.9
2666 Male, age 74, left hemisphere 26.6
Dorsal raphe nucleus
nTPM: 34.0
2016 Female, age 72, unknown 39.4
2750 Male, age 76, both hemispheres 37.9
1828 Male, age 53, unknown 32.1
2298 Female, age 72, unknown 31.8
2047 Male, age 72, unknown 28.8
Inferior colliculus
nTPM: 29.1
2849 Male, age 72, unknown 29.3
1848 Female, age 42, unknown 29.1
2097 Female, age 72, unknown 29.1
1890 Male, age 53, unknown 29.0
Median raphe nucleus
nTPM: 39.0
2220 Male, age 76, midline 39.0
Pedunculopontine tegmental nucleus
nTPM: 32.5
2338 Male, age 61, both hemispheres 33.7
1921 Female, age 85, both hemispheres 31.9
2334 Male, age 80, both hemispheres 31.9
Periaquaductal grey, anterior
nTPM: 30.7
1795 Male, age 51, unknown 33.2
2502 Female, age 75, unknown 32.0
1947 Male, age 18, unknown 26.9
Periaquaductal grey, dorsal
nTPM: 34.0
2850 Male, age 76, both hemispheres 41.7
1831 Male, age 72, unknown 38.8
1840 Male, age 53, unknown 28.3
2464 Female, age 72, unknown 27.2
Periaquaductal grey, lateral
nTPM: 39.9
2053 Male, age 18, unknown 41.5
2140 Male, age 76, both hemispheres 39.3
2272 Male, age 74, both hemispheres 38.7
Pretectal area
nTPM: 33.7
2273 Male, age 74, both hemispheres 48.6
2316 Male, age 76, right hemisphere 43.0
2407 Male, age 75, both hemispheres 41.4
2224 Female, age 72, unknown 35.2
2667 Female, age 75, unknown 35.1
1815 Male, age 53, unknown 32.7
2825 Male, age 18, unknown 32.0
1944 Female, age 72, unknown 28.4
1817 Female, age 42, unknown 27.0
2007 Male, age 72, unknown 23.9
1816 Male, age 51, unknown 23.3
Red nucleus
nTPM: 35.1
1865 Male, age 51, unknown 39.4
1904 Male, age 53, unknown 37.5
2503 Female, age 72, unknown 37.3
2785 Male, age 18, unknown 37.3
2227 Male, age 72, unknown 37.1
2769 Male, age 72, unknown 37.1
1821 Female, age 72, unknown 34.9
1954 Female, age 42, unknown 34.2
2823 Male, age 76, right hemisphere 33.7
2584 Male, age 75, left hemisphere 31.7
2725 Female, age 75, unknown 31.7
2588 Male, age 74, left hemisphere 29.0
Substantia nigra
nTPM: 29.5
2699 Male, age 18, unknown 37.6
1851 Male, age 51, unknown 33.3
2583 Male, age 75, right hemisphere 31.3
2590 Female, age 75, unknown 31.3
1941 Male, age 53, unknown 29.5
1916 Female, age 42, unknown 27.6
1889 Female, age 72, unknown 27.5
2241 Male, age 72, unknown 26.3
2409 Female, age 72, unknown 26.0
2665 Male, age 74, both hemispheres 25.0
Superior colliculus
nTPM: 36.5
1995 Male, age 72, unknown 55.8
1913 Female, age 42, unknown 53.8
1796 Male, age 53, unknown 36.2
2587 Male, age 74, left hemisphere 36.2
1839 Male, age 51, unknown 32.1
2668 Female, age 75, unknown 31.5
2664 Male, age 75, both hemispheres 31.1
2087 Female, age 72, unknown 30.8
1895 Male, age 76, right hemisphere 28.8
2261 Male, age 18, unknown 28.4
Ventral tegmental area
nTPM: 35.8
2223 Female, age 72, unknown 40.9
1942 Male, age 51, unknown 37.4
2021 Male, age 53, unknown 36.6
1915 Female, age 42, unknown 36.1
2218 Male, age 76, both hemispheres 34.3
2410 Female, age 72, unknown 29.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.0
Samples: 139

Max nTPM: 75.5
Min nTPM: 10.3
Std nTPM: 11.9
Median nTPM: 30.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 75.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 63.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 59.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 59.6
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 58.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 57.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 55.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 53.0
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 51.0
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 50.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 50.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 169.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 169.5
FF:10158-103A5 76 years, female 169.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.1
Samples: 4

Max nTPM: 23.0
Min nTPM: 20.8
Sample A Male 22.5
Sample B Male 20.8
Sample C Female 23.0
Sample D Female 22.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68191132 Antisense, RP_041122_02_G12, Mouse strain C57BL/6J (56 days, male) 0.2

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