BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:106.4 nTPM
HPA:106.4 nTPM
GTEx:57.6 nTPM
FANTOM5:126.4 Scaled Tags Per Million
Pig:27.2 nTPM
Mouse:63.4 nTPM
Allen mouse:6.8 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA004798
Glial cells High
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 106.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 65.1
2481 Female, age 94, left hemisphere 77.8
2288 Male, age 75, left hemisphere 66.6
1781 Male, age 74, unknown 65.3
2289 Male, age 61, right hemisphere 65.0
2290 Female, age 72, unknown 64.9
1854 Male, age 80, left hemisphere 64.3
1857 Female, age 85, left hemisphere 59.8
2846 Female, age 79, unknown 57.3
Claustrum
nTPM: 67.8
2292 Female, age 85, both hemispheres 85.0
1956 Male, age 74, unknown 81.1
2196 Female, age 79, unknown 70.1
2392 Female, age 94, both hemispheres 67.6
2198 Male, age 80, both hemispheres 66.3
2491 Male, age 75, both hemispheres 65.0
2645 Female, age 72, unknown 60.9
2284 Female, age 91, both hemispheres 60.1
2568 Male, age 61, both hemispheres 54.3
Globus pallidus, externus
nTPM: 104.2
1996 Male, age 80, right hemisphere 116.6
2646 Male, age 61, right hemisphere 110.6
2567 Female, age 72, unknown 110.1
2772 Female, age 79, unknown 100.2
2395 Male, age 75, both hemispheres 83.4
Globus pallidus, internus
nTPM: 106.4
2111 Female, age 85, right hemisphere 125.9
2778 Female, age 91, both hemispheres 112.3
2566 Female, age 72, unknown 106.1
2037 Male, age 80, right hemisphere 103.8
1818 Male, age 74, unknown 101.3
2483 Female, age 94, right hemisphere 98.1
2287 Male, age 75, right hemisphere 97.5
Nucleus accumbens
nTPM: 67.5
2391 Female, age 94, left hemisphere 82.1
2732 Male, age 80, right hemisphere 79.3
2698 Female, age 72, unknown 72.9
1806 Female, age 85, left hemisphere 70.0
2286 Male, age 75, left hemisphere 69.2
1783 Male, age 74, unknown 59.7
2824 Male, age 61, right hemisphere 56.7
1856 Female, age 91, right hemisphere 50.3
Nucleus basalis of Meynert
nTPM: 76.6
2569 Male, age 61, both hemispheres 113.2
2484 Female, age 94, left hemisphere 67.1
2821 Male, age 75, both hemispheres 64.0
2393 Male, age 80, right hemisphere 62.3
Nucleus of the diagonal band
nTPM: 53.9
1812 Female, age 91, both hemispheres 59.8
1979 Male, age 74, unknown 56.0
2029 Male, age 61, right hemisphere 53.2
2775 Male, age 80, right hemisphere 52.0
2195 Female, age 85, both hemispheres 48.4
Olfactory tubercle
nTPM: 55.2
2856 Male, age 75, right hemisphere 59.0
1846 Male, age 80, right hemisphere 57.9
2487 Female, age 94, left hemisphere 54.4
1998 Female, age 91, both hemispheres 49.5
Putamen
nTPM: 63.7
2482 Female, age 94, left hemisphere 74.2
1829 Male, age 74, unknown 68.5
2647 Male, age 75, left hemisphere 68.5
2489 Female, age 72, unknown 67.2
1937 Female, age 91, right hemisphere 60.5
2466 Female, age 79, unknown 55.3
1838 Male, age 80, right hemisphere 51.8
Septal nuclei
nTPM: 59.7
2394 Male, age 61, left hemisphere 72.8
2199 Male, age 80, right hemisphere 70.7
2059 Female, age 85, both hemispheres 62.1
2629 Female, age 94, right hemisphere 56.3
2009 Female, age 91, both hemispheres 55.9
2031 Female, age 72, unknown 51.2
1960 Male, age 74, unknown 48.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 57.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 53.0
Samples: 246

Max nTPM: 120.9
Min nTPM: 13.5
Std nTPM: 17.4
Median nTPM: 52.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 120.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 107.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 93.4
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 91.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 90.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 90.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 89.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 89.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 89.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 84.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 83.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 43.7
Samples: 246

Max nTPM: 138.7
Min nTPM: 15.0
Std nTPM: 18.4
Median nTPM: 39.6
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 138.7
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 105.8
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 94.8
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 88.4
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 88.3
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 85.7
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 85.0
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 83.5
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 83.3
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 82.7
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 81.2
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Brain - Putamen (basal ganglia)
Average nTPM: 57.6
Samples: 205

Max nTPM: 163.3
Min nTPM: 24.5
Std nTPM: 19.7
Median nTPM: 54.3
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 163.3
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 119.4
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 112.8
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 107.6
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 100.9
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 97.2
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 94.3
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 93.6
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 92.5
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 92.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 90.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 126.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 71.4
FF:10164-103B2 76 years, female 71.4
Globus pallidus
Scaled Tags Per Million: 126.4
FF:10161-103A8 76 years, female 151.7
FF:10175-103C4 60 years, female 101.0
Nucleus accumbens
Scaled Tags Per Million: 94.8
FF:10037-101F1 23-56 years, mixed 94.8
Putamen
Scaled Tags Per Million: 68.3
FF:10176-103C5 60 years, female 68.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 27.2
Pig sample Sample description nTPM
Caudate
nTPM: 14.5
Samples: 4

Max nTPM: 14.8
Min nTPM: 14.0
Sample A Female 14.8
Sample B Female 14.0
Sample C Male 14.7
Sample D Male 14.3
Putamen
nTPM: 27.1
Samples: 4

Max nTPM: 43.2
Min nTPM: 16.4
Sample A Female 43.2
Sample B Female 16.4
Sample C Male 21.0
Sample D Male 27.9
Septum
nTPM: 20.4
Samples: 4

Max nTPM: 23.7
Min nTPM: 16.7
Sample A Female 20.1
Sample B Female 16.7
Sample C Male 20.9
Sample D Male 23.7
Ventral pallidum
nTPM: 27.2
Samples: 4

Max nTPM: 39.5
Min nTPM: 14.4
Sample A Female 14.4
Sample B Female 22.8
Sample C Male 39.5
Sample D Male 32.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 63.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 40.3
Samples: 4

Max nTPM: 48.6
Min nTPM: 32.2
Sample A Male 43.8
Sample B Male 48.6
Sample C Female 32.2
Sample D Female 36.7
Septum
nTPM: 63.5
Samples: 4

Max nTPM: 72.9
Min nTPM: 56.2
Sample A Male 72.9
Sample B Male 57.5
Sample C Female 56.2
Sample D Female 67.2
Ventral forebrain
nTPM: 42.6
Samples: 4

Max nTPM: 52.5
Min nTPM: 33.9
Sample A Male 38.8
Sample B Male 52.5
Sample C Female 45.0
Sample D Female 33.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 6.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 6.4
70474911 Antisense, RP_050623_01_D01, Mouse strain C57BL/6J (56 days, male) 6.4
Pallidum
Expression energy: 6.8
70474911 Antisense, RP_050623_01_D01, Mouse strain C57BL/6J (56 days, male) 6.8

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The Human Protein Atlas

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