MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:105.1 nTPM
HPA:105.1 nTPM
GTEx:80.9 nTPM
FANTOM5:211.4 Scaled Tags Per Million
Pig:46.2 nTPM
Mouse:81.8 nTPM
Allen mouse:8.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 105.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 90.2
1870 Female, age 42, unknown 107.2
2019 Male, age 18, unknown 104.5
1830 Male, age 51, unknown 98.4
2411 Female, age 72, unknown 96.3
2586 Male, age 75, left hemisphere 95.4
2828 Female, age 72, unknown 95.2
1833 Male, age 53, unknown 95.0
1827 Male, age 72, unknown 77.9
2666 Male, age 74, left hemisphere 75.3
2219 Male, age 76, both hemispheres 57.0
Dorsal raphe nucleus
nTPM: 82.6
2016 Female, age 72, unknown 98.6
2750 Male, age 76, both hemispheres 88.0
1828 Male, age 53, unknown 83.6
2298 Female, age 72, unknown 74.1
2047 Male, age 72, unknown 68.8
Inferior colliculus
nTPM: 76.4
1848 Female, age 42, unknown 79.1
2849 Male, age 72, unknown 76.8
1890 Male, age 53, unknown 76.1
2097 Female, age 72, unknown 73.8
Median raphe nucleus
nTPM: 68.8
2220 Male, age 76, midline 68.8
Pedunculopontine tegmental nucleus
nTPM: 75.2
2338 Male, age 61, both hemispheres 77.7
2334 Male, age 80, both hemispheres 77.3
1921 Female, age 85, both hemispheres 70.5
Periaquaductal grey, anterior
nTPM: 80.6
2502 Female, age 75, unknown 94.3
1795 Male, age 51, unknown 75.1
1947 Male, age 18, unknown 72.3
Periaquaductal grey, dorsal
nTPM: 81.0
2850 Male, age 76, both hemispheres 92.5
2464 Female, age 72, unknown 84.9
1831 Male, age 72, unknown 73.6
1840 Male, age 53, unknown 72.9
Periaquaductal grey, lateral
nTPM: 87.8
2140 Male, age 76, both hemispheres 100.6
2053 Male, age 18, unknown 85.2
2272 Male, age 74, both hemispheres 77.7
Pretectal area
nTPM: 77.8
2316 Male, age 76, right hemisphere 91.0
2273 Male, age 74, both hemispheres 90.1
2407 Male, age 75, both hemispheres 86.0
2667 Female, age 75, unknown 83.1
1815 Male, age 53, unknown 82.9
2825 Male, age 18, unknown 76.8
1817 Female, age 42, unknown 76.0
2224 Female, age 72, unknown 73.8
2007 Male, age 72, unknown 68.2
1944 Female, age 72, unknown 65.0
1816 Male, age 51, unknown 63.4
Red nucleus
nTPM: 105.1
1904 Male, age 53, unknown 121.0
2769 Male, age 72, unknown 120.9
2227 Male, age 72, unknown 118.9
1865 Male, age 51, unknown 114.2
2785 Male, age 18, unknown 112.7
1954 Female, age 42, unknown 111.9
1821 Female, age 72, unknown 109.1
2503 Female, age 72, unknown 100.9
2588 Male, age 74, left hemisphere 93.7
2823 Male, age 76, right hemisphere 91.8
2725 Female, age 75, unknown 84.8
2584 Male, age 75, left hemisphere 81.4
Substantia nigra
nTPM: 78.7
2699 Male, age 18, unknown 88.0
1851 Male, age 51, unknown 87.4
2409 Female, age 72, unknown 86.1
2583 Male, age 75, right hemisphere 83.7
2590 Female, age 75, unknown 81.6
1889 Female, age 72, unknown 78.1
2241 Male, age 72, unknown 74.2
1916 Female, age 42, unknown 72.5
2665 Male, age 74, both hemispheres 68.4
1941 Male, age 53, unknown 66.6
Superior colliculus
nTPM: 85.6
1995 Male, age 72, unknown 117.9
1913 Female, age 42, unknown 112.8
2664 Male, age 75, both hemispheres 88.4
1839 Male, age 51, unknown 85.1
2587 Male, age 74, left hemisphere 84.8
1796 Male, age 53, unknown 79.9
2668 Female, age 75, unknown 76.1
1895 Male, age 76, right hemisphere 73.2
2087 Female, age 72, unknown 70.7
2261 Male, age 18, unknown 67.5
Ventral tegmental area
nTPM: 85.6
2223 Female, age 72, unknown 99.3
2410 Female, age 72, unknown 87.9
2021 Male, age 53, unknown 86.5
1915 Female, age 42, unknown 85.6
1942 Male, age 51, unknown 81.4
2218 Male, age 76, both hemispheres 72.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 80.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 80.9
Samples: 139

Max nTPM: 164.5
Min nTPM: 17.8
Std nTPM: 28.2
Median nTPM: 78.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 164.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 151.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 144.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 139.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 139.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 136.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 135.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 133.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 129.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 128.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 127.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 211.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 211.4
FF:10158-103A5 76 years, female 211.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 46.2
Pig sample Sample description nTPM
Midbrain
nTPM: 46.2
Samples: 4

Max nTPM: 94.5
Min nTPM: 25.0
Sample A Female 94.5
Sample B Female 37.7
Sample C Male 27.5
Sample D Male 25.0
Periaqueductal gray
nTPM: 28.8
Samples: 3

Max nTPM: 33.3
Min nTPM: 24.8
Sample B Female 33.3
Sample C Male 24.8
Sample D Male 28.3
Substantia nigra
nTPM: 42.7
Samples: 4

Max nTPM: 58.2
Min nTPM: 31.1
Sample A Female 44.9
Sample B Female 31.1
Sample C Male 36.6
Sample D Male 58.2
Superior colliculi
nTPM: 35.3
Samples: 4

Max nTPM: 42.4
Min nTPM: 24.5
Sample A Female 42.4
Sample B Female 24.5
Sample C Male 36.6
Sample D Male 37.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 81.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 81.8
Samples: 4

Max nTPM: 96.8
Min nTPM: 72.6
Sample A Male 96.8
Sample B Male 76.7
Sample C Female 72.6
Sample D Female 81.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.6
70474911 Antisense, RP_050623_01_D01, Mouse strain C57BL/6J (56 days, male) 8.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.