MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:27.0 nTPM
HPA:27.0 nTPM
GTEx:31.6 nTPM
FANTOM5:165.0 Scaled Tags Per Million
Pig:84.3 nTPM
Mouse:81.3 nTPM
Allen mouse:7.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.0
2019 Male, age 18, unknown 26.9
2666 Male, age 74, left hemisphere 26.6
2586 Male, age 75, left hemisphere 24.2
2219 Male, age 76, both hemispheres 21.4
2828 Female, age 72, unknown 21.1
1833 Male, age 53, unknown 20.9
1830 Male, age 51, unknown 20.7
1827 Male, age 72, unknown 20.0
2411 Female, age 72, unknown 19.8
1870 Female, age 42, unknown 18.6
Dorsal raphe nucleus
nTPM: 19.9
2047 Male, age 72, unknown 21.6
2750 Male, age 76, both hemispheres 21.0
2298 Female, age 72, unknown 19.3
1828 Male, age 53, unknown 18.8
2016 Female, age 72, unknown 18.7
Inferior colliculus
nTPM: 19.6
2849 Male, age 72, unknown 23.8
1848 Female, age 42, unknown 19.1
2097 Female, age 72, unknown 18.2
1890 Male, age 53, unknown 17.2
Median raphe nucleus
nTPM: 27.0
2220 Male, age 76, midline 27.0
Pedunculopontine tegmental nucleus
nTPM: 22.3
2334 Male, age 80, both hemispheres 23.6
2338 Male, age 61, both hemispheres 22.5
1921 Female, age 85, both hemispheres 20.8
Periaquaductal grey, anterior
nTPM: 19.7
1795 Male, age 51, unknown 21.6
1947 Male, age 18, unknown 18.8
2502 Female, age 75, unknown 18.5
Periaquaductal grey, dorsal
nTPM: 20.2
2850 Male, age 76, both hemispheres 26.1
1831 Male, age 72, unknown 21.3
1840 Male, age 53, unknown 17.5
2464 Female, age 72, unknown 15.9
Periaquaductal grey, lateral
nTPM: 19.9
2272 Male, age 74, both hemispheres 23.5
2140 Male, age 76, both hemispheres 19.8
2053 Male, age 18, unknown 16.3
Pretectal area
nTPM: 26.0
1817 Female, age 42, unknown 38.0
1816 Male, age 51, unknown 36.5
2007 Male, age 72, unknown 31.8
1815 Male, age 53, unknown 29.9
1944 Female, age 72, unknown 29.2
2667 Female, age 75, unknown 27.1
2224 Female, age 72, unknown 19.7
2273 Male, age 74, both hemispheres 19.3
2407 Male, age 75, both hemispheres 18.3
2825 Male, age 18, unknown 18.2
2316 Male, age 76, right hemisphere 17.4
Red nucleus
nTPM: 20.2
2785 Male, age 18, unknown 26.3
2725 Female, age 75, unknown 21.7
1821 Female, age 72, unknown 21.4
2588 Male, age 74, left hemisphere 20.5
2823 Male, age 76, right hemisphere 20.5
2503 Female, age 72, unknown 20.0
2227 Male, age 72, unknown 19.6
1865 Male, age 51, unknown 19.1
2584 Male, age 75, left hemisphere 18.9
2769 Male, age 72, unknown 18.4
1904 Male, age 53, unknown 18.3
1954 Female, age 42, unknown 17.5
Substantia nigra
nTPM: 23.2
1889 Female, age 72, unknown 29.1
2665 Male, age 74, both hemispheres 29.0
1941 Male, age 53, unknown 25.8
2409 Female, age 72, unknown 23.9
1916 Female, age 42, unknown 23.6
2583 Male, age 75, right hemisphere 22.9
1851 Male, age 51, unknown 21.8
2699 Male, age 18, unknown 21.2
2590 Female, age 75, unknown 17.9
2241 Male, age 72, unknown 16.7
Superior colliculus
nTPM: 22.6
2668 Female, age 75, unknown 25.8
2261 Male, age 18, unknown 25.6
1796 Male, age 53, unknown 24.8
1913 Female, age 42, unknown 24.1
2087 Female, age 72, unknown 24.0
2587 Male, age 74, left hemisphere 22.8
1995 Male, age 72, unknown 20.6
1839 Male, age 51, unknown 20.1
1895 Male, age 76, right hemisphere 19.1
2664 Male, age 75, both hemispheres 18.9
Ventral tegmental area
nTPM: 21.6
2218 Male, age 76, both hemispheres 25.0
2223 Female, age 72, unknown 23.2
2410 Female, age 72, unknown 22.7
2021 Male, age 53, unknown 22.0
1915 Female, age 42, unknown 20.1
1942 Male, age 51, unknown 16.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.6
Samples: 139

Max nTPM: 53.7
Min nTPM: 23.0
Std nTPM: 4.4
Median nTPM: 31.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 53.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 46.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 43.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 40.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 40.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 40.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 39.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 38.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 38.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 38.5
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 38.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 165.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 165.0
FF:10158-103A5 76 years, female 165.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 84.3
Pig sample Sample description nTPM
Midbrain
nTPM: 84.3
Samples: 4

Max nTPM: 96.9
Min nTPM: 69.7
Sample A Female 86.3
Sample B Female 69.7
Sample C Male 96.9
Sample D Male 84.4
Periaqueductal gray
nTPM: 68.6
Samples: 3

Max nTPM: 74.7
Min nTPM: 62.6
Sample B Female 62.6
Sample C Male 74.7
Sample D Male 68.4
Substantia nigra
nTPM: 73.7
Samples: 4

Max nTPM: 88.3
Min nTPM: 64.0
Sample A Female 88.3
Sample B Female 65.6
Sample C Male 77.0
Sample D Male 64.0
Superior colliculi
nTPM: 82.7
Samples: 4

Max nTPM: 96.1
Min nTPM: 63.0
Sample A Female 89.3
Sample B Female 63.0
Sample C Male 96.1
Sample D Male 82.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 81.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 81.3
Samples: 4

Max nTPM: 84.5
Min nTPM: 78.9
Sample A Male 78.9
Sample B Male 84.5
Sample C Female 82.6
Sample D Female 79.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.2
68445113 Antisense, RP_050111_02_G10, Mouse strain C57BL/6J (56 days, male) 13.9
881 Antisense, RP_Baylor_102992, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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