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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:33.7 nTPM
GTEx:33.7 nTPM
FANTOM5:58.5 Scaled Tags Per Million
Mouse:6.3 nTPM

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 33.7
GTEx sample id Sample description nTPM
Retina
Average nTPM: 33.7
Samples: 105

Max nTPM: 82.4
Min nTPM: 14.9
Std nTPM: 11.9
Median nTPM:
308_1 70 years, female 82.4
120_1 70 years, female 65.2
491_1 89 years, female 60.7
162_1 79 years, female 60.0
495_1 57 years, female 58.1
414_1 84 years, female 57.9
137_1 83 years, male 53.1
348_1 84 years, male 53.1
384_1 83 years, male 52.5
501_1 88 years, male 52.5
139_1 64 years, female 51.6
314_1 67 years, male 49.7
4_1 88 years, female 48.2
126_1 63 years, male 48.0
17_1 71 years, male 47.2
307_1 66 years, female 47.1
490_1 67 years, female 46.3
173_1 67 years, male 43.7
404_1 82 years, female 43.6
313_1 79 years, female 43.4
295_1 61 years, female 41.7
266_1 85 years, male 41.6
413_1 59 years, female 41.5
315_1 62 years, female 41.3
42_1 85 years, male 40.8
415_1 77 years, female 40.8
452_1 88 years, female 40.6
254_1 77 years, female 39.6
142_1 61 years, female 39.1
322_1 76 years, male 38.7
119_1 70 years, female 38.5
43_1 64 years, female 38.2
480_1 63 years, male 37.4
149_1 88 years, male 37.0
288_1 66 years, female 36.9
6_1 73 years, female 36.5
320_1 89 years, female 36.4
145_1 84 years, male 36.3
35_1 74 years, female 35.7
375_1 74 years, female 34.9
109_1 81 years, female 34.2
379_1 60 years, male 34.2
518_1 75 years, female 34.0
237_1 82 years, male 33.1
81_1 67 years, male 32.8
153_1 70 years, female 32.6
351_1 91 years, male 32.4
447_1 81 years, male 32.4
18_1 88 years, male 32.2
2_1 77 years, female 32.1
264_1 73 years, female 31.9
189_1 76 years, male 31.8
89_1 63 years, male 31.6
311_1 78 years, male 31.4
389_1 86 years, female 30.9
316_1 62 years, male 30.8
466_1 57 years, female 30.7
503_1 68 years, male 30.0
41_1 94 years, female 29.5
217_1 76 years, male 29.0
246_1 77 years, male 28.9
286_1 68 years, female 28.6
251_1 78 years, male 28.5
293_1 68 years, female 28.4
324_1 76 years, male 28.3
425_1 59 years, female 28.3
117_1 61 years, male 28.2
396_1 62 years, male 27.7
32_1 67 years, male 27.6
319_1 81 years, male 27.1
243_1 75 years, male 26.9
405_1 91 years, male 26.3
321_1 62 years, female 26.1
115_1 83 years, male 25.9
9_1 66 years, female 25.7
99_1 64 years, male 25.6
377_1 82 years, female 24.9
229_1 69 years, female 24.6
386_1 76 years, male 24.5
218_1 71 years, female 24.1
376_1 75 years, female 24.0
506_1 65 years, male 23.9
526_1 61 years, male 23.7
353_1 82 years, female 23.4
291_1 76 years, male 23.3
317_1 60 years, male 23.1
356_1 87 years, female 23.1
406_1 79 years, male 23.1
172_1 72 years, female 22.9
499_1 55 years, female 22.8
318_1 68 years, male 22.5
265_1 87 years, male 22.2
349_1 83 years, male 21.9
347_1 72 years, male 20.9
335_1 73 years, female 20.8
394_1 75 years, female 20.6
354_1 81 years, female 20.4
292_1 71 years, male 19.9
352_1 62 years, male 18.8
517_1 88 years, male 18.5
355_1 70 years, female 18.4
468_1 89 years, male 18.3
177_1 74 years, male 17.9
350_1 84 years, female 16.3
163_1 78 years, male 14.9
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 58.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 58.5
FF:10030-101E3 24-65 years, mixed 58.5

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 6.3
Mouse sample Sample description nTPM
Retina
nTPM: 6.3
Samples: 4

Max nTPM: 7.3
Min nTPM: 5.4
Sample A Male 5.4
Sample B Male 6.4
Sample C Female 6.0
Sample D Female 7.3

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by the Knut & Alice Wallenberg Foundation.