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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:126.9 nTPM
HPA:126.9 nTPM
FANTOM5:340.7 Scaled Tags Per Million
Allen mouse:6.0 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 126.9
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 114.9
2301 Female, age 85, both hemispheres 123.5
2188 Female, age 91, both hemispheres 117.0
2090 Male, age 80, both hemispheres 115.5
1984 Male, age 76, both hemispheres 103.4
Dorsal cochlear nucleus
nTPM: 117.7
2802 Male, age 74, right hemisphere 133.9
2187 Female, age 91, both hemispheres 121.4
2378 Male, age 80, both hemispheres 115.2
2058 Male, age 76, both hemispheres 111.3
2370 Male, age 61, both hemispheres 106.6
Dorsal tegmental nucleus
nTPM: 118.3
2326 Male, age 74, both hemispheres 130.1
2083 Male, age 80, both hemispheres 117.4
2358 Male, age 61, both hemispheres 116.1
1936 Male, age 76, left hemisphere 109.6
Dorsolateral tegmental area
nTPM: 110.4
2654 Male, age 80, both hemispheres 121.3
2751 Female, age 85, both hemispheres 116.2
2360 Male, age 74, both hemispheres 105.9
2337 Male, age 61, both hemispheres 105.4
2141 Male, age 76, both hemispheres 103.1
Kolliker-Fuse nucleus
nTPM: 115.2
2315 Male, age 76, right hemisphere 120.6
2793 Female, age 91, left hemisphere 115.5
2163 Male, age 80, both hemispheres 109.6
Lateral lemniscal nuclei
nTPM: 108.9
2453 Male, age 74, right hemisphere 116.5
2320 Female, age 91, left hemisphere 113.7
2746 Female, age 85, left hemisphere 109.9
2169 Male, age 76, both hemispheres 109.5
2036 Male, age 80, both hemispheres 94.8
Lateral parabrachial nucleus
nTPM: 111.3
2792 Male, age 76, both hemispheres 123.7
2013 Male, age 80, both hemispheres 115.2
2139 Female, age 85, right hemisphere 105.1
2790 Male, age 61, both hemispheres 101.3
Lateral vestibular nucleus
nTPM: 111.7
2311 Male, age 80, both hemispheres 118.5
2184 Male, age 76, both hemispheres 104.9
Locus coeruleus
nTPM: 104.1
2788 Male, age 74, unknown 111.3
2720 Male, age 74, both hemispheres 107.2
2317 Female, age 72, unknown 106.6
2014 Male, age 55, unknown 104.2
2123 Female, age 91, both hemispheres 102.7
2162 Male, age 80, both hemispheres 99.2
1980 Male, age 76, both hemispheres 97.7
Medial olivary nucleus
nTPM: 126.9
1943 Male, age 61, both hemispheres 135.1
2138 Female, age 91, both hemispheres 133.4
1962 Male, age 76, both hemispheres 126.6
2851 Male, age 80, both hemispheres 112.6
Medial parabrachial nucleus
nTPM: 111.8
2170 Female, age 91, both hemispheres 120.6
2786 Male, age 76, both hemispheres 110.9
2463 Female, age 85, right hemisphere 110.5
2854 Male, age 80, both hemispheres 109.0
2156 Male, age 61, both hemispheres 108.0
Medial periolivary nuclei
nTPM: 110.6
2081 Male, age 80, both hemispheres 116.0
2458 Female, age 91, both hemispheres 114.9
2063 Male, age 76, both hemispheres 114.8
2791 Male, age 74, right hemisphere 106.3
2171 Female, age 85, both hemispheres 100.8
Motor facial nucleus
nTPM: 110.9
2126 Male, age 61, both hemispheres 114.6
2327 Male, age 80, both hemispheres 111.5
2062 Male, age 76, both hemispheres 110.0
2795 Female, age 91, both hemispheres 110.0
2365 Male, age 74, right hemisphere 109.8
2697 Female, age 85, both hemispheres 109.3
Motor trigeminal nucleus
nTPM: 110.3
2321 Female, age 91, both hemispheres 114.8
2335 Male, age 61, both hemispheres 113.0
2309 Male, age 76, both hemispheres 110.9
2560 Male, age 74, both hemispheres 108.3
2079 Male, age 80, both hemispheres 104.6
Nuclei of the trapezoid body
nTPM: 109.7
1983 Male, age 76, both hemispheres 111.9
2159 Male, age 61, both hemispheres 111.4
2368 Female, age 91, both hemispheres 111.0
2166 Male, age 80, both hemispheres 110.5
2735 Female, age 85, both hemispheres 103.9
Paramedian reticular nucleus
nTPM: 116.1
2052 Male, age 76, both hemispheres 130.2
2313 Male, age 61, both hemispheres 114.6
2057 Male, age 80, both hemispheres 114.2
2050 Female, age 85, both hemispheres 105.5
Pontine nuclei
nTPM: 111.0
2319 Female, age 91, both hemispheres 120.9
2454 Male, age 74, left hemisphere 118.2
2109 Female, age 72, unknown 112.2
2727 Male, age 61, right hemisphere 112.2
1968 Male, age 76, left hemisphere 110.4
2115 Male, age 80, left hemisphere 107.8
1863 Male, age 55, unknown 106.6
2787 Female, age 85, both hemispheres 99.7
Pontine raphe nucleus
nTPM: 105.6
2122 Female, age 85, midline 105.9
2853 Male, age 76, midline 105.2
Posteroventral cochlear nucleus
nTPM: 126.9
2341 Male, age 80, both hemispheres 146.9
2135 Female, age 91, both hemispheres 132.3
2371 Male, age 61, both hemispheres 123.6
2070 Male, age 76, both hemispheres 118.5
2752 Female, age 85, both hemispheres 113.1
Principal sensory trigeminal nucleus
nTPM: 110.0
2367 Female, age 91, left hemisphere 114.7
2324 Male, age 76, both hemispheres 111.7
2158 Male, age 61, both hemispheres 109.5
2008 Male, age 80, left hemisphere 104.0
Reticular pontine nucleus, caudal
nTPM: 113.5
2457 Female, age 91, both hemispheres 119.6
2559 Male, age 74, both hemispheres 112.0
2092 Male, age 76, both hemispheres 111.6
2332 Male, age 80, right hemisphere 110.7
Reticular pontine nucleus, oral
nTPM: 114.3
2366 Female, age 91, both hemispheres 119.4
1939 Male, age 80, both hemispheres 119.1
2361 Male, age 74, both hemispheres 117.3
2167 Male, age 76, both hemispheres 108.7
2012 Female, age 85, both hemispheres 107.1
Reticulotegmental nucleus
nTPM: 122.5
2322 Female, age 91, both hemispheres 133.0
2452 Male, age 74, both hemispheres 131.6
2333 Male, age 80, both hemispheres 115.1
2325 Male, age 76, both hemispheres 110.2
Spinal trigeminal nucleus, oral
nTPM: 108.7
2164 Male, age 80, both hemispheres 111.9
1978 Male, age 76, both hemispheres 110.6
2737 Female, age 85, both hemispheres 103.6
Subcoeruleus area
nTPM: 115.8
2451 Male, age 74, both hemispheres 129.9
2369 Female, age 85, left hemisphere 118.5
2323 Female, age 91, left hemisphere 114.1
1958 Male, age 80, both hemispheres 112.0
2089 Male, age 76, left hemisphere 104.6
Superior olive
nTPM: 109.2
2020 Male, age 76, both hemispheres 115.4
2329 Male, age 80, right hemisphere 111.3
2561 Female, age 91, both hemispheres 110.5
2364 Male, age 74, right hemisphere 106.4
1875 Female, age 85, both hemispheres 102.2
Superior vestibular nucleus
nTPM: 111.2
2015 Male, age 80, both hemispheres 114.7
2061 Male, age 76, both hemispheres 109.7
2383 Male, age 74, both hemispheres 109.1
Ventral periolivary nuclei
nTPM: 106.9
2023 Male, age 76, both hemispheres 118.1
2165 Male, age 80, both hemispheres 106.2
2794 Female, age 91, left hemisphere 103.8
2130 Female, age 85, both hemispheres 99.4
Ventrolateral tegmental area, A5 NE cell group
nTPM: 109.8
2456 Female, age 91, both hemispheres 117.3
2161 Male, age 80, both hemispheres 113.3
2449 Male, age 74, both hemispheres 113.0
1959 Male, age 76, both hemispheres 108.2
2840 Female, age 85, both hemispheres 106.3
2359 Male, age 61, both hemispheres 100.6

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 340.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 340.7
FF:10182-103D2 60 years, female 375.1
FF:10165-103B3 76 years, female 306.4
Pons
Scaled Tags Per Million: 269.1
FF:10033-101E6 18-54 years, mixed 269.1

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 6.0
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 6.0
68301831 Antisense, RP_041130_01_H07, Mouse strain C57BL/6J (56 days, male) 6.0

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