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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:141.1 nTPM
HPA:141.1 nTPM
GTEx:170.8 nTPM
FANTOM5:296.4 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 141.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 118.8
1981 Female, age 72, midline 126.7
2048 Male, age 55, midline 122.1
2565 Male, age 75, midline 121.1
2194 Female, age 79, both hemispheres 115.8
2816 Male, age 47, midline 108.5
Cervical spinal cord, dorsal horn
nTPM: 120.9
2173 Female, age 72, unknown 134.1
2069 Male, age 47, both hemispheres 131.8
2296 Male, age 66, both hemispheres 126.8
1877 Male, age 55, unknown 118.9
2297 Male, age 75, both hemispheres 112.7
2721 Male, age 90, both hemispheres 100.8
Cervical spinal cord, ventral horn
nTPM: 141.1
2480 Male, age 75, both hemispheres 176.2
2809 Male, age 90, both hemispheres 159.7
2295 Male, age 66, both hemispheres 150.6
2098 Female, age 72, unknown 127.1
2068 Male, age 55, unknown 125.2
2820 Female, age 79, both hemispheres 108.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 170.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 170.8
Samples: 159

Max nTPM: 361.5
Min nTPM: 104.8
Std nTPM: 38.6
Median nTPM: 161.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 361.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 321.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 299.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 297.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 253.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 253.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 250.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 246.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 239.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 236.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 236.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 226.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 220.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 219.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 217.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 211.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 211.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 210.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 210.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 208.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 207.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 206.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 205.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 204.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 201.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 201.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 200.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 200.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 199.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 199.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 196.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 191.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 190.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 189.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 189.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 189.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 189.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 188.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 188.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 187.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 187.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 187.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 186.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 186.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 185.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 185.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 184.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 184.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 184.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 183.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 183.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 180.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 179.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 179.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 176.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 176.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 175.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 174.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 174.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 173.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 172.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 172.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 170.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 170.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 169.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 169.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 168.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 166.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 165.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 164.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 164.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 164.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 164.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 163.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 163.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 163.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 163.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 163.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 162.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 161.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 161.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 160.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 160.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 159.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 158.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 158.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 158.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 158.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 157.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 156.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 156.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 156.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 156.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 155.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 155.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 155.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 154.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 154.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 154.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 154.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 154.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 153.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 153.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 153.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 153.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 152.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 152.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 152.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 151.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 151.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 150.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 149.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 149.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 149.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 148.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 147.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 147.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 147.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 147.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 147.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 145.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 145.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 144.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 143.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 143.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 143.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 143.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 142.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 142.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 141.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 140.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 139.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 138.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 138.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 138.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 138.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 136.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 136.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 135.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 135.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 133.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 132.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 132.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 130.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 129.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 129.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 129.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 128.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 128.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 127.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 126.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 126.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 125.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 124.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 120.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 119.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 113.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 110.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 104.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 296.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 296.4
FF:10159-103A6 76 years, female 343.5
FF:10181-103D1 60 years, female 249.2

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