MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:148.8 nTPM
HPA:148.8 nTPM
GTEx:101.1 nTPM
FANTOM5:66.3 Scaled Tags Per Million
Pig:60.1 nTPM
Mouse:137.0 nTPM
Allen mouse:11.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 148.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 148.8
2586 Male, age 75, left hemisphere 202.2
2666 Male, age 74, left hemisphere 157.4
1827 Male, age 72, unknown 155.2
2828 Female, age 72, unknown 152.7
2019 Male, age 18, unknown 148.2
2411 Female, age 72, unknown 138.2
1870 Female, age 42, unknown 136.3
2219 Male, age 76, both hemispheres 132.9
1830 Male, age 51, unknown 132.6
1833 Male, age 53, unknown 132.0
Dorsal raphe nucleus
nTPM: 132.3
2047 Male, age 72, unknown 139.5
1828 Male, age 53, unknown 136.2
2750 Male, age 76, both hemispheres 131.4
2298 Female, age 72, unknown 129.6
2016 Female, age 72, unknown 124.8
Inferior colliculus
nTPM: 132.7
1848 Female, age 42, unknown 134.7
1890 Male, age 53, unknown 134.2
2097 Female, age 72, unknown 132.2
2849 Male, age 72, unknown 129.8
Median raphe nucleus
nTPM: 129.2
2220 Male, age 76, midline 129.2
Pedunculopontine tegmental nucleus
nTPM: 133.9
1921 Female, age 85, both hemispheres 134.4
2334 Male, age 80, both hemispheres 133.7
2338 Male, age 61, both hemispheres 133.5
Periaquaductal grey, anterior
nTPM: 145.9
1947 Male, age 18, unknown 150.2
1795 Male, age 51, unknown 150.1
2502 Female, age 75, unknown 137.4
Periaquaductal grey, dorsal
nTPM: 130.3
1831 Male, age 72, unknown 134.1
1840 Male, age 53, unknown 131.7
2464 Female, age 72, unknown 130.9
2850 Male, age 76, both hemispheres 124.4
Periaquaductal grey, lateral
nTPM: 127.0
2053 Male, age 18, unknown 134.5
2140 Male, age 76, both hemispheres 128.8
2272 Male, age 74, both hemispheres 117.6
Pretectal area
nTPM: 147.2
1816 Male, age 51, unknown 172.9
2007 Male, age 72, unknown 167.3
1817 Female, age 42, unknown 164.3
1944 Female, age 72, unknown 161.9
1815 Male, age 53, unknown 153.9
2667 Female, age 75, unknown 145.7
2407 Male, age 75, both hemispheres 141.5
2825 Male, age 18, unknown 134.6
2316 Male, age 76, right hemisphere 133.3
2224 Female, age 72, unknown 126.3
2273 Male, age 74, both hemispheres 117.8
Red nucleus
nTPM: 140.3
2584 Male, age 75, left hemisphere 164.2
2823 Male, age 76, right hemisphere 149.0
2588 Male, age 74, left hemisphere 147.9
2785 Male, age 18, unknown 145.4
2725 Female, age 75, unknown 139.0
1821 Female, age 72, unknown 137.4
2769 Male, age 72, unknown 136.0
1954 Female, age 42, unknown 135.4
2227 Male, age 72, unknown 133.4
1904 Male, age 53, unknown 133.0
1865 Male, age 51, unknown 132.4
2503 Female, age 72, unknown 130.2
Substantia nigra
nTPM: 142.2
2583 Male, age 75, right hemisphere 162.0
2665 Male, age 74, both hemispheres 154.6
1889 Female, age 72, unknown 148.3
1941 Male, age 53, unknown 148.3
1916 Female, age 42, unknown 147.1
1851 Male, age 51, unknown 146.0
2590 Female, age 75, unknown 138.2
2241 Male, age 72, unknown 129.5
2699 Male, age 18, unknown 127.9
2409 Female, age 72, unknown 120.0
Superior colliculus
nTPM: 145.1
2664 Male, age 75, both hemispheres 168.1
2668 Female, age 75, unknown 157.6
2261 Male, age 18, unknown 150.4
2087 Female, age 72, unknown 150.2
1796 Male, age 53, unknown 149.6
1895 Male, age 76, right hemisphere 139.0
1839 Male, age 51, unknown 136.7
1913 Female, age 42, unknown 134.8
1995 Male, age 72, unknown 133.0
2587 Male, age 74, left hemisphere 131.7
Ventral tegmental area
nTPM: 136.7
2410 Female, age 72, unknown 142.7
1915 Female, age 42, unknown 140.0
2218 Male, age 76, both hemispheres 139.5
1942 Male, age 51, unknown 135.5
2021 Male, age 53, unknown 132.3
2223 Female, age 72, unknown 130.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 101.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 101.1
Samples: 139

Max nTPM: 212.7
Min nTPM: 42.2
Std nTPM: 27.3
Median nTPM: 96.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 212.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 196.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 193.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 176.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 171.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 168.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 152.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 149.6
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 146.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 144.4
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 134.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 66.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 66.3
FF:10158-103A5 76 years, female 66.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 60.1
Pig sample Sample description nTPM
Midbrain
nTPM: 53.9
Samples: 4

Max nTPM: 61.0
Min nTPM: 40.5
Sample A Female 59.4
Sample B Female 40.5
Sample C Male 61.0
Sample D Male 54.7
Periaqueductal gray
nTPM: 38.0
Samples: 3

Max nTPM: 41.5
Min nTPM: 34.0
Sample B Female 38.5
Sample C Male 41.5
Sample D Male 34.0
Substantia nigra
nTPM: 44.8
Samples: 4

Max nTPM: 58.1
Min nTPM: 37.0
Sample A Female 58.1
Sample B Female 39.9
Sample C Male 44.1
Sample D Male 37.0
Superior colliculi
nTPM: 60.1
Samples: 4

Max nTPM: 67.5
Min nTPM: 51.5
Sample A Female 67.5
Sample B Female 58.0
Sample C Male 63.4
Sample D Male 51.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 137.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 137.0
Samples: 4

Max nTPM: 149.4
Min nTPM: 128.3
Sample A Male 149.4
Sample B Male 133.8
Sample C Female 128.3
Sample D Female 136.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.0
68668048 Antisense, RP_050203_01_C11, Mouse strain C57BL/6J (56 days, male) 11.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.