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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:9.8 nTPM
HPA:4.8 nTPM
GTEx:9.8 nTPM
FANTOM5:5.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA048086Antibody CAB017116
Glandular cells LowNot detected



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 4.8
overview
Male, age 65
Small intestine sample 232
nTPM: 5.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 7.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 2.9

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 9.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 9.8
Samples: 187

Max nTPM: 87.3
Min nTPM: 0.7
Std nTPM: 11.0
Median nTPM: 6.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 87.3
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 86.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 46.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 41.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 36.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 34.1
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 32.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 30.6
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 29.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 27.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 25.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 23.7
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 23.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 23.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 23.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 21.7
GTEX-13111-1426-SM-5DUW3 50-59 years, male 21.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 21.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 21.1
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 20.9
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 20.0
GTEX-YFCO-1326-SM-664NV 40-49 years, male 19.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 18.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 18.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 17.2
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 16.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 15.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 15.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 15.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 15.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 15.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 15.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 14.9
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 14.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 14.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 14.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 14.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 14.1
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 13.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 13.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 13.3
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 12.1
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 12.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 11.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 11.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 11.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 10.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 10.8
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 10.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 10.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 10.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 10.3
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 10.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 10.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 9.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 9.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 9.2
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 8.7
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 8.6
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 8.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 8.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 8.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 8.3
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 8.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 8.2
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 8.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 8.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 8.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 8.1
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 8.1
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 8.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 8.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 7.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 7.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 7.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 7.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 7.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 7.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 7.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 7.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 7.0
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 6.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 6.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 6.7
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 6.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 6.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 6.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 6.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 6.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 6.2
GTEX-14PK6-1626-SM-6871I 70-79 years, female 6.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 6.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 6.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 6.1
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 6.1
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 6.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 6.0
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 6.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 6.0
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 5.9
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 5.9
GTEX-1C475-1426-SM-793CH 40-49 years, female 5.9
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 5.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 5.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 5.8
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 5.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 5.7
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 5.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 5.7
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 5.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 5.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 5.6
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 5.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 5.5
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 5.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 5.4
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 5.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 5.2
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 5.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 5.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 5.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 5.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 5.0
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 5.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 4.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 4.9
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 4.9
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 4.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 4.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 4.8
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 4.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 4.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 4.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 4.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 4.6
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 4.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 4.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 4.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 4.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 4.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 4.4
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 4.3
GTEX-144GM-1026-SM-79OKU 20-29 years, male 4.3
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 4.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 4.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 4.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 4.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 4.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 4.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 4.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 4.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 4.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 4.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 4.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 3.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 3.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 3.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 3.7
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 3.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 3.5
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 3.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 3.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 3.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 3.3
GTEX-13113-1226-SM-5EGHT 60-69 years, female 3.3
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 3.3
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 3.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 3.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 3.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 3.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 2.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 2.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 2.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 2.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 2.6
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 2.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 2.3
GTEX-1192X-2526-SM-59868 50-59 years, male 2.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 2.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 2.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1.3
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1.2
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 0.7
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 0.7
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 5.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 5.7
FF:10024-101D6 15,40,85 years, mixed 5.7

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