MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:152.7 nTPM
HPA:152.7 nTPM
GTEx:169.0 nTPM
FANTOM5:57.6 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 152.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 147.5
1870 Female, age 42, unknown 152.4
1827 Male, age 72, unknown 151.4
2666 Male, age 74, left hemisphere 151.4
2828 Female, age 72, unknown 150.9
2019 Male, age 18, unknown 150.8
2411 Female, age 72, unknown 146.5
2586 Male, age 75, left hemisphere 145.5
1833 Male, age 53, unknown 142.9
2219 Male, age 76, both hemispheres 142.5
1830 Male, age 51, unknown 140.8
Dorsal raphe nucleus
nTPM: 151.9
2298 Female, age 72, unknown 162.1
2047 Male, age 72, unknown 152.8
1828 Male, age 53, unknown 150.6
2016 Female, age 72, unknown 148.7
2750 Male, age 76, both hemispheres 145.4
Inferior colliculus
nTPM: 147.2
2097 Female, age 72, unknown 155.1
1890 Male, age 53, unknown 147.5
1848 Female, age 42, unknown 144.6
2849 Male, age 72, unknown 141.5
Median raphe nucleus
nTPM: 146.9
2220 Male, age 76, midline 146.9
Pedunculopontine tegmental nucleus
nTPM: 152.7
2338 Male, age 61, both hemispheres 159.5
1921 Female, age 85, both hemispheres 151.3
2334 Male, age 80, both hemispheres 147.2
Periaquaductal grey, anterior
nTPM: 147.5
1795 Male, age 51, unknown 150.2
1947 Male, age 18, unknown 147.1
2502 Female, age 75, unknown 145.2
Periaquaductal grey, dorsal
nTPM: 145.5
2850 Male, age 76, both hemispheres 147.9
1831 Male, age 72, unknown 147.1
1840 Male, age 53, unknown 147.0
2464 Female, age 72, unknown 140.1
Periaquaductal grey, lateral
nTPM: 144.9
2053 Male, age 18, unknown 146.8
2140 Male, age 76, both hemispheres 144.6
2272 Male, age 74, both hemispheres 143.4
Pretectal area
nTPM: 150.4
1816 Male, age 51, unknown 155.8
1817 Female, age 42, unknown 155.3
1944 Female, age 72, unknown 155.0
2273 Male, age 74, both hemispheres 152.5
1815 Male, age 53, unknown 152.1
2007 Male, age 72, unknown 151.4
2316 Male, age 76, right hemisphere 149.9
2224 Female, age 72, unknown 149.2
2667 Female, age 75, unknown 149.1
2825 Male, age 18, unknown 143.9
2407 Male, age 75, both hemispheres 140.2
Red nucleus
nTPM: 146.9
2503 Female, age 72, unknown 156.9
1821 Female, age 72, unknown 153.7
1904 Male, age 53, unknown 150.0
2823 Male, age 76, right hemisphere 149.4
2785 Male, age 18, unknown 148.6
1865 Male, age 51, unknown 147.7
1954 Female, age 42, unknown 145.7
2769 Male, age 72, unknown 144.7
2227 Male, age 72, unknown 144.2
2725 Female, age 75, unknown 143.3
2588 Male, age 74, left hemisphere 140.4
2584 Male, age 75, left hemisphere 137.8
Substantia nigra
nTPM: 148.3
1916 Female, age 42, unknown 155.3
1851 Male, age 51, unknown 153.8
1889 Female, age 72, unknown 150.7
2583 Male, age 75, right hemisphere 148.5
2590 Female, age 75, unknown 148.4
2699 Male, age 18, unknown 147.9
2665 Male, age 74, both hemispheres 147.6
1941 Male, age 53, unknown 146.6
2241 Male, age 72, unknown 144.5
2409 Female, age 72, unknown 139.6
Superior colliculus
nTPM: 150.9
2668 Female, age 75, unknown 158.0
1995 Male, age 72, unknown 157.4
2587 Male, age 74, left hemisphere 155.4
1913 Female, age 42, unknown 151.6
1796 Male, age 53, unknown 151.3
2087 Female, age 72, unknown 149.2
2261 Male, age 18, unknown 149.2
1895 Male, age 76, right hemisphere 148.5
2664 Male, age 75, both hemispheres 144.4
1839 Male, age 51, unknown 144.0
Ventral tegmental area
nTPM: 148.9
1915 Female, age 42, unknown 154.2
2218 Male, age 76, both hemispheres 149.5
1942 Male, age 51, unknown 148.9
2410 Female, age 72, unknown 147.2
2223 Female, age 72, unknown 147.1
2021 Male, age 53, unknown 146.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 169.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 169.0
Samples: 139

Max nTPM: 429.5
Min nTPM: 59.3
Std nTPM: 54.9
Median nTPM: 155.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 429.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 376.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 336.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 318.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 313.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 279.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 261.3
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 256.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 255.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 252.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 251.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 57.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 57.6
FF:10158-103A5 76 years, female 57.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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