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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:127.1 nTPM
HPA:127.1 nTPM
GTEx:95.8 nTPM
FANTOM5:84.7 Scaled Tags Per Million
Pig:37.2 nTPM
Mouse:38.0 nTPM
Allen mouse:5.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 127.1
Sample id Sample description nTPM
Amygdala
nTPM: 127.1
2814 Male, age 76, right hemisphere 139.2
2695 Female, age 67, right hemisphere 131.2
2514 Male, age 75, right hemisphere 126.1
1987 Female, age 91, left hemisphere 125.7
2517 Female, age 94, left hemisphere 113.4
Basal amygdala
nTPM: 111.7
1955 Male, age 76, both hemispheres 121.8
2609 Male, age 75, right hemisphere 117.6
2110 Male, age 80, left hemisphere 111.8
2243 Female, age 91, right hemisphere 111.6
2685 Female, age 94, left hemisphere 107.1
2827 Female, age 67, right hemisphere 100.3
Central amygdala
nTPM: 116.4
1905 Male, age 76, both hemispheres 122.8
2515 Male, age 75, right hemisphere 119.6
2701 Female, age 91, right hemisphere 116.6
2826 Female, age 94, left hemisphere 115.0
2239 Male, age 80, left hemisphere 108.0
Corticomedial amygdala
nTPM: 112.7
2428 Male, age 75, right hemisphere 123.4
2240 Male, age 76, both hemispheres 119.3
2242 Female, age 91, right hemisphere 117.2
2429 Female, age 94, left hemisphere 109.1
2829 Male, age 80, left hemisphere 109.1
2535 Female, age 67, right hemisphere 97.9
Lateral amygdala
nTPM: 113.2
1883 Male, age 76, both hemispheres 129.2
2256 Male, age 80, left hemisphere 115.9
2516 Male, age 75, right hemisphere 113.5
2255 Female, age 91, right hemisphere 108.8
2534 Female, age 94, left hemisphere 107.6
2830 Female, age 67, right hemisphere 104.3
Stria terminalis, bed nucleus
nTPM: 106.4
2201 Male, age 74, unknown 108.4
1974 Female, age 91, both hemispheres 107.1
2486 Female, age 94, both hemispheres 103.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 95.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 95.8
Samples: 152

Max nTPM: 230.4
Min nTPM: 29.5
Std nTPM: 30.3
Median nTPM: 90.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 230.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 224.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 164.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 160.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 159.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 158.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 156.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 148.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 147.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 145.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 144.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 134.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 134.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 134.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 134.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 133.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 132.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 132.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 130.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 130.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 123.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 122.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 118.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 118.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 118.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 117.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 117.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 117.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 117.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 117.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 117.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 116.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 116.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 114.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 113.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 113.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 112.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 112.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 111.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 110.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 110.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 110.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 110.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 110.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 109.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 108.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 108.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 107.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 105.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 104.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 104.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 104.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 103.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 103.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 102.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 101.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 101.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 100.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 100.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 100.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 99.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 98.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 97.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 97.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 96.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 95.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 95.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 95.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 95.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 94.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 94.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 93.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 93.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 92.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 91.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 91.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 89.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 88.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 88.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 88.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 88.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 88.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 87.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 87.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 86.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 86.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 86.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 86.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 85.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 85.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 84.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 84.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 84.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 84.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 84.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 83.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 83.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 83.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 83.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 82.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 82.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 81.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 81.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 80.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 80.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 79.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 77.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 77.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 77.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 76.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 75.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 75.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 75.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 75.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 75.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 75.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 75.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 75.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 75.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 74.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 74.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 73.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 73.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 72.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 71.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 71.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 70.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 70.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 70.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 69.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 69.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 68.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 68.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 68.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 64.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 63.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 62.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 61.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 61.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 59.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 59.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 58.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 57.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 56.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 53.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 52.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 49.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 47.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 46.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 43.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 42.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 29.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 84.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 84.7
FF:10151-102I7 76 years, female 84.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 37.2
Pig sample Sample description nTPM
Amygdala
nTPM: 37.2
Samples: 4

Max nTPM: 52.6
Min nTPM: 25.0
Sample A Female 52.6
Sample B Female 40.0
Sample C Male 31.2
Sample D Male 25.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 38.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 38.1
Samples: 4

Max nTPM: 43.7
Min nTPM: 35.0
Sample A Male 36.8
Sample B Male 35.0
Sample C Female 43.7
Sample D Female 36.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 5.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.0
75774115 Antisense, RP_060530_01_B11, Mouse strain C57BL/6J (56 days, male) 6.1
293915 Antisense, RP_040617_01_G02, Mouse strain C57BL/6J (56 days, male) 3.9

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