MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:42.3 nTPM
HPA:42.3 nTPM
GTEx:43.5 nTPM
FANTOM5:62.8 Scaled Tags Per Million
Pig:3.8 nTPM
Mouse:6.1 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.5
2666 Male, age 74, left hemisphere 43.4
2586 Male, age 75, left hemisphere 40.6
1833 Male, age 53, unknown 37.4
1830 Male, age 51, unknown 37.1
2828 Female, age 72, unknown 36.1
1870 Female, age 42, unknown 33.4
2411 Female, age 72, unknown 31.3
2019 Male, age 18, unknown 30.6
1827 Male, age 72, unknown 30.1
2219 Male, age 76, both hemispheres 24.9
Dorsal raphe nucleus
nTPM: 26.8
2016 Female, age 72, unknown 32.3
2750 Male, age 76, both hemispheres 30.3
1828 Male, age 53, unknown 26.6
2047 Male, age 72, unknown 24.2
2298 Female, age 72, unknown 20.7
Inferior colliculus
nTPM: 25.7
2849 Male, age 72, unknown 27.7
1848 Female, age 42, unknown 27.4
1890 Male, age 53, unknown 25.4
2097 Female, age 72, unknown 22.1
Median raphe nucleus
nTPM: 24.3
2220 Male, age 76, midline 24.3
Pedunculopontine tegmental nucleus
nTPM: 26.4
2334 Male, age 80, both hemispheres 28.4
2338 Male, age 61, both hemispheres 26.4
1921 Female, age 85, both hemispheres 24.4
Periaquaductal grey, anterior
nTPM: 24.1
2502 Female, age 75, unknown 25.8
1795 Male, age 51, unknown 23.4
1947 Male, age 18, unknown 23.1
Periaquaductal grey, dorsal
nTPM: 24.7
1831 Male, age 72, unknown 29.0
2464 Female, age 72, unknown 27.3
1840 Male, age 53, unknown 21.3
2850 Male, age 76, both hemispheres 21.2
Periaquaductal grey, lateral
nTPM: 25.3
2053 Male, age 18, unknown 29.6
2272 Male, age 74, both hemispheres 24.3
2140 Male, age 76, both hemispheres 22.0
Pretectal area
nTPM: 26.2
2316 Male, age 76, right hemisphere 31.7
1815 Male, age 53, unknown 30.2
2407 Male, age 75, both hemispheres 29.5
2825 Male, age 18, unknown 29.1
2224 Female, age 72, unknown 27.4
1817 Female, age 42, unknown 26.4
2007 Male, age 72, unknown 24.9
1944 Female, age 72, unknown 23.8
2273 Male, age 74, both hemispheres 23.5
2667 Female, age 75, unknown 21.5
1816 Male, age 51, unknown 20.6
Red nucleus
nTPM: 42.3
2588 Male, age 74, left hemisphere 53.3
1865 Male, age 51, unknown 51.5
1904 Male, age 53, unknown 49.4
2725 Female, age 75, unknown 43.8
2823 Male, age 76, right hemisphere 42.2
1954 Female, age 42, unknown 40.9
2227 Male, age 72, unknown 40.2
2503 Female, age 72, unknown 39.5
2769 Male, age 72, unknown 38.0
2584 Male, age 75, left hemisphere 37.9
2785 Male, age 18, unknown 36.4
1821 Female, age 72, unknown 34.6
Substantia nigra
nTPM: 28.9
2583 Male, age 75, right hemisphere 35.2
2590 Female, age 75, unknown 33.1
2699 Male, age 18, unknown 32.7
2665 Male, age 74, both hemispheres 31.3
1851 Male, age 51, unknown 31.2
2409 Female, age 72, unknown 26.8
1889 Female, age 72, unknown 25.9
2241 Male, age 72, unknown 25.6
1941 Male, age 53, unknown 24.7
1916 Female, age 42, unknown 22.3
Superior colliculus
nTPM: 29.9
1995 Male, age 72, unknown 35.7
1913 Female, age 42, unknown 33.7
2587 Male, age 74, left hemisphere 33.4
1839 Male, age 51, unknown 31.2
1895 Male, age 76, right hemisphere 30.8
2664 Male, age 75, both hemispheres 28.9
2668 Female, age 75, unknown 28.0
2087 Female, age 72, unknown 26.1
1796 Male, age 53, unknown 26.0
2261 Male, age 18, unknown 24.9
Ventral tegmental area
nTPM: 28.8
2410 Female, age 72, unknown 32.7
2021 Male, age 53, unknown 29.9
2223 Female, age 72, unknown 29.8
1915 Female, age 42, unknown 28.4
1942 Male, age 51, unknown 26.3
2218 Male, age 76, both hemispheres 25.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 43.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.5
Samples: 139

Max nTPM: 216.7
Min nTPM: 7.1
Std nTPM: 31.2
Median nTPM: 35.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 216.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 163.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 139.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 132.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 109.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 101.0
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 95.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 93.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 90.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 87.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 86.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 62.8
FF:10158-103A5 76 years, female 62.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 3.8
Pig sample Sample description nTPM
Midbrain
nTPM: 1.6
Samples: 4

Max nTPM: 2.2
Min nTPM: 1.1
Sample A Female 1.7
Sample B Female 1.1
Sample C Male 2.2
Sample D Male 1.3
Periaqueductal gray
nTPM: 0.6
Samples: 3

Max nTPM: 0.8
Min nTPM: 0.5
Sample B Female 0.8
Sample C Male 0.6
Sample D Male 0.5
Substantia nigra
nTPM: 3.3
Samples: 4

Max nTPM: 5.8
Min nTPM: 1.6
Sample A Female 2.8
Sample B Female 5.8
Sample C Male 1.6
Sample D Male 3.1
Superior colliculi
nTPM: 3.8
Samples: 4

Max nTPM: 7.1
Min nTPM: 2.1
Sample A Female 3.2
Sample B Female 7.1
Sample C Male 2.1
Sample D Male 2.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.1
Samples: 4

Max nTPM: 6.7
Min nTPM: 5.6
Sample A Male 6.3
Sample B Male 5.6
Sample C Female 6.7
Sample D Female 5.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
2667 Antisense, RP_040420_01_H06, Mouse strain C57BL/6J (56 days, male) 1.7
2668 Antisense, RP_040420_01_H06, Mouse strain C57BL/6J (56 days, male) 1.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.