BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:45.8 nTPM
HPA:45.8 nTPM
GTEx:26.0 nTPM
FANTOM5:43.9 Scaled Tags Per Million
Pig:1.1 nTPM
Mouse:6.5 nTPM
Allen mouse:1.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 45.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 23.2
1781 Male, age 74, unknown 26.9
2288 Male, age 75, left hemisphere 25.8
2846 Female, age 79, unknown 25.4
2289 Male, age 61, right hemisphere 23.0
2290 Female, age 72, unknown 22.4
1854 Male, age 80, left hemisphere 21.7
2481 Female, age 94, left hemisphere 21.5
1857 Female, age 85, left hemisphere 18.7
Claustrum
nTPM: 33.8
2292 Female, age 85, both hemispheres 52.1
2491 Male, age 75, both hemispheres 34.7
1956 Male, age 74, unknown 32.8
2196 Female, age 79, unknown 32.8
2198 Male, age 80, both hemispheres 32.6
2392 Female, age 94, both hemispheres 32.5
2284 Female, age 91, both hemispheres 29.6
2568 Male, age 61, both hemispheres 28.9
2645 Female, age 72, unknown 28.1
Globus pallidus, externus
nTPM: 45.8
2646 Male, age 61, right hemisphere 57.2
2567 Female, age 72, unknown 54.3
1996 Male, age 80, right hemisphere 44.3
2395 Male, age 75, both hemispheres 37.0
2772 Female, age 79, unknown 36.3
Globus pallidus, internus
nTPM: 43.3
2111 Female, age 85, right hemisphere 55.0
2483 Female, age 94, right hemisphere 50.8
2566 Female, age 72, unknown 45.8
2287 Male, age 75, right hemisphere 45.0
2778 Female, age 91, both hemispheres 43.6
1818 Male, age 74, unknown 31.7
2037 Male, age 80, right hemisphere 31.6
Nucleus accumbens
nTPM: 24.0
2732 Male, age 80, right hemisphere 30.6
2698 Female, age 72, unknown 29.5
2391 Female, age 94, left hemisphere 26.0
1806 Female, age 85, left hemisphere 23.0
2286 Male, age 75, left hemisphere 21.5
1783 Male, age 74, unknown 21.3
2824 Male, age 61, right hemisphere 21.3
1856 Female, age 91, right hemisphere 18.7
Nucleus basalis of Meynert
nTPM: 34.4
2569 Male, age 61, both hemispheres 57.2
2484 Female, age 94, left hemisphere 29.1
2821 Male, age 75, both hemispheres 26.5
2393 Male, age 80, right hemisphere 24.8
Nucleus of the diagonal band
nTPM: 20.3
2029 Male, age 61, right hemisphere 22.5
1812 Female, age 91, both hemispheres 20.3
1979 Male, age 74, unknown 20.3
2775 Male, age 80, right hemisphere 20.0
2195 Female, age 85, both hemispheres 18.5
Olfactory tubercle
nTPM: 21.1
2487 Female, age 94, left hemisphere 22.2
1846 Male, age 80, right hemisphere 21.3
1998 Female, age 91, both hemispheres 20.4
2856 Male, age 75, right hemisphere 20.3
Putamen
nTPM: 26.6
2489 Female, age 72, unknown 34.7
2647 Male, age 75, left hemisphere 29.8
1829 Male, age 74, unknown 27.9
2466 Female, age 79, unknown 25.6
1937 Female, age 91, right hemisphere 25.0
2482 Female, age 94, left hemisphere 23.4
1838 Male, age 80, right hemisphere 19.7
Septal nuclei
nTPM: 21.7
2394 Male, age 61, left hemisphere 25.0
2059 Female, age 85, both hemispheres 22.8
2629 Female, age 94, right hemisphere 22.6
2031 Female, age 72, unknown 21.6
2199 Male, age 80, right hemisphere 21.2
2009 Female, age 91, both hemispheres 19.4
1960 Male, age 74, unknown 19.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 26.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 14.4
Samples: 246

Max nTPM: 68.7
Min nTPM: 2.8
Std nTPM: 10.0
Median nTPM: 11.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 68.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 65.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 52.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 51.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 45.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 44.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 42.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 41.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 38.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 38.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 36.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 12.4
Samples: 246

Max nTPM: 62.2
Min nTPM: 2.7
Std nTPM: 10.7
Median nTPM: 8.5
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 62.2
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 56.1
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 55.0
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 51.5
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 47.7
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 47.6
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 43.7
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 43.1
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 42.9
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 41.5
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 39.9
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Brain - Putamen (basal ganglia)
Average nTPM: 26.0
Samples: 205

Max nTPM: 138.0
Min nTPM: 3.5
Std nTPM: 20.0
Median nTPM: 20.6
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 138.0
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 136.2
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 122.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 84.2
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 79.3
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 77.1
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 75.2
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 72.5
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 64.6
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 61.2
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 60.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 13.3
FF:10164-103B2 76 years, female 13.3
Globus pallidus
Scaled Tags Per Million: 43.9
FF:10161-103A8 76 years, female 66.6
FF:10175-103C4 60 years, female 21.3
Nucleus accumbens
Scaled Tags Per Million: 13.9
FF:10037-101F1 23-56 years, mixed 13.9
Putamen
Scaled Tags Per Million: 13.0
FF:10176-103C5 60 years, female 13.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 1.1
Pig sample Sample description nTPM
Caudate
nTPM: 0.7
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.5
Sample A Female 0.5
Sample B Female 0.6
Sample C Male 0.7
Sample D Male 0.8
Putamen
nTPM: 0.6
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.5
Sample A Female 0.7
Sample B Female 0.5
Sample C Male 0.6
Sample D Male 0.7
Septum
nTPM: 1.1
Samples: 4

Max nTPM: 1.7
Min nTPM: 0.7
Sample A Female 1.7
Sample B Female 0.7
Sample C Male 1.1
Sample D Male 0.9
Ventral pallidum
nTPM: 0.7
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.5
Sample A Female 0.5
Sample B Female 0.9
Sample C Male 0.8
Sample D Male 0.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 6.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 5.3
Samples: 4

Max nTPM: 5.8
Min nTPM: 4.3
Sample A Male 5.2
Sample B Male 4.3
Sample C Female 5.8
Sample D Female 5.7
Septum
nTPM: 3.9
Samples: 4

Max nTPM: 4.4
Min nTPM: 3.2
Sample A Male 4.3
Sample B Male 3.7
Sample C Female 3.2
Sample D Female 4.4
Ventral forebrain
nTPM: 6.5
Samples: 4

Max nTPM: 7.0
Min nTPM: 5.8
Sample A Male 5.8
Sample B Male 6.4
Sample C Female 7.0
Sample D Female 6.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.2
2667 Antisense, RP_040420_01_H06, Mouse strain C57BL/6J (56 days, male) 1.2
2668 Antisense, RP_040420_01_H06, Mouse strain C57BL/6J (56 days, male) 1.1
Pallidum
Expression energy: 1.5
2668 Antisense, RP_040420_01_H06, Mouse strain C57BL/6J (56 days, male) 1.5
2667 Antisense, RP_040420_01_H06, Mouse strain C57BL/6J (56 days, male) 1.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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