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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:241.0 nTPM
HPA:241.0 nTPM
GTEx:264.4 nTPM
FANTOM5:178.2 Scaled Tags Per Million
Pig:16.7 nTPM
Mouse:37.4 nTPM
Allen mouse:0.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 241.0
Sample id Sample description nTPM
Amygdala
nTPM: 241.0
2814 Male, age 76, right hemisphere 251.3
2514 Male, age 75, right hemisphere 244.4
2695 Female, age 67, right hemisphere 238.4
2517 Female, age 94, left hemisphere 235.5
1987 Female, age 91, left hemisphere 235.2
Basal amygdala
nTPM: 235.7
2110 Male, age 80, left hemisphere 243.8
2685 Female, age 94, left hemisphere 239.3
2609 Male, age 75, right hemisphere 236.3
1955 Male, age 76, both hemispheres 236.1
2243 Female, age 91, right hemisphere 232.1
2827 Female, age 67, right hemisphere 226.6
Central amygdala
nTPM: 237.9
2826 Female, age 94, left hemisphere 243.9
1905 Male, age 76, both hemispheres 243.5
2515 Male, age 75, right hemisphere 235.0
2239 Male, age 80, left hemisphere 234.9
2701 Female, age 91, right hemisphere 232.2
Corticomedial amygdala
nTPM: 236.3
2829 Male, age 80, left hemisphere 241.2
2429 Female, age 94, left hemisphere 239.5
2240 Male, age 76, both hemispheres 236.8
2428 Male, age 75, right hemisphere 236.4
2242 Female, age 91, right hemisphere 235.9
2535 Female, age 67, right hemisphere 228.2
Lateral amygdala
nTPM: 234.9
1883 Male, age 76, both hemispheres 245.6
2534 Female, age 94, left hemisphere 244.0
2516 Male, age 75, right hemisphere 235.2
2830 Female, age 67, right hemisphere 228.9
2256 Male, age 80, left hemisphere 227.8
2255 Female, age 91, right hemisphere 227.6
Stria terminalis, bed nucleus
nTPM: 237.8
1974 Female, age 91, both hemispheres 248.7
2201 Male, age 74, unknown 232.8
2486 Female, age 94, both hemispheres 231.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 264.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 264.4
Samples: 152

Max nTPM: 1078.2
Min nTPM: 116.7
Std nTPM: 118.0
Median nTPM: 241.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1078.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 751.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 707.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 705.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 509.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 505.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 464.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 455.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 404.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 393.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 385.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 382.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 379.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 378.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 378.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 377.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 364.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 344.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 339.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 335.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 332.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 331.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 330.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 327.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 324.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 322.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 318.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 318.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 315.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 315.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 315.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 310.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 309.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 308.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 305.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 304.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 302.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 301.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 293.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 292.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 291.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 287.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 286.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 281.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 279.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 279.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 272.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 272.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 270.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 270.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 268.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 268.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 267.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 261.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 261.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 259.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 258.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 257.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 257.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 256.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 256.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 251.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 250.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 249.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 248.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 247.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 246.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 246.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 246.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 245.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 244.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 244.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 243.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 243.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 241.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 241.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 240.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 239.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 238.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 237.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 236.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 235.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 234.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 233.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 233.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 231.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 231.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 230.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 230.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 229.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 229.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 228.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 228.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 227.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 225.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 223.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 223.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 223.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 221.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 218.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 217.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 217.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 214.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 212.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 212.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 211.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 210.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 207.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 201.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 200.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 200.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 195.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 194.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 193.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 191.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 191.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 190.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 190.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 190.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 188.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 187.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 187.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 185.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 185.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 185.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 184.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 184.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 184.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 183.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 183.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 182.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 182.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 181.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 180.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 178.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 174.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 173.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 173.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 171.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 170.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 170.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 169.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 163.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 159.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 149.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 147.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 136.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 132.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 130.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 123.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 122.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 116.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 178.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 178.2
FF:10151-102I7 76 years, female 178.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 16.7
Pig sample Sample description nTPM
Amygdala
nTPM: 16.7
Samples: 4

Max nTPM: 23.7
Min nTPM: 12.6
Sample A Female 23.7
Sample B Female 17.2
Sample C Male 13.4
Sample D Male 12.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 37.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 37.4
Samples: 4

Max nTPM: 42.4
Min nTPM: 35.1
Sample A Male 35.1
Sample B Male 36.4
Sample C Female 42.4
Sample D Female 35.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.3
75198184 Antisense, RP_060502_02_B05, Mouse strain C57BL/6J (56 days, male) 0.3

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