MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:247.5 nTPM
HPA:247.5 nTPM
GTEx:228.7 nTPM
FANTOM5:198.9 Scaled Tags Per Million
Pig:31.0 nTPM
Mouse:46.8 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 247.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 237.3
2411 Female, age 72, unknown 246.9
1870 Female, age 42, unknown 244.6
1833 Male, age 53, unknown 241.2
1827 Male, age 72, unknown 238.8
2019 Male, age 18, unknown 238.5
1830 Male, age 51, unknown 238.3
2828 Female, age 72, unknown 233.5
2219 Male, age 76, both hemispheres 233.4
2666 Male, age 74, left hemisphere 230.9
2586 Male, age 75, left hemisphere 226.3
Dorsal raphe nucleus
nTPM: 240.5
2750 Male, age 76, both hemispheres 244.6
2298 Female, age 72, unknown 244.3
1828 Male, age 53, unknown 240.9
2047 Male, age 72, unknown 240.0
2016 Female, age 72, unknown 232.7
Inferior colliculus
nTPM: 237.4
1890 Male, age 53, unknown 239.3
2097 Female, age 72, unknown 238.4
1848 Female, age 42, unknown 236.9
2849 Male, age 72, unknown 235.0
Median raphe nucleus
nTPM: 242.2
2220 Male, age 76, midline 242.2
Pedunculopontine tegmental nucleus
nTPM: 247.5
1921 Female, age 85, both hemispheres 250.4
2334 Male, age 80, both hemispheres 249.6
2338 Male, age 61, both hemispheres 242.5
Periaquaductal grey, anterior
nTPM: 239.0
1947 Male, age 18, unknown 243.3
2502 Female, age 75, unknown 239.0
1795 Male, age 51, unknown 234.8
Periaquaductal grey, dorsal
nTPM: 234.5
2850 Male, age 76, both hemispheres 237.6
1840 Male, age 53, unknown 235.3
2464 Female, age 72, unknown 234.0
1831 Male, age 72, unknown 231.0
Periaquaductal grey, lateral
nTPM: 234.2
2053 Male, age 18, unknown 236.5
2272 Male, age 74, both hemispheres 235.4
2140 Male, age 76, both hemispheres 230.7
Pretectal area
nTPM: 237.7
2007 Male, age 72, unknown 242.5
1817 Female, age 42, unknown 241.6
1815 Male, age 53, unknown 241.2
1816 Male, age 51, unknown 240.6
1944 Female, age 72, unknown 239.5
2825 Male, age 18, unknown 237.5
2316 Male, age 76, right hemisphere 236.9
2407 Male, age 75, both hemispheres 236.5
2224 Female, age 72, unknown 234.7
2667 Female, age 75, unknown 232.3
2273 Male, age 74, both hemispheres 231.5
Red nucleus
nTPM: 242.6
1821 Female, age 72, unknown 258.7
2725 Female, age 75, unknown 245.8
1904 Male, age 53, unknown 243.8
2769 Male, age 72, unknown 242.9
1954 Female, age 42, unknown 242.5
2503 Female, age 72, unknown 242.5
1865 Male, age 51, unknown 242.1
2823 Male, age 76, right hemisphere 242.0
2227 Male, age 72, unknown 240.5
2588 Male, age 74, left hemisphere 240.1
2785 Male, age 18, unknown 237.6
2584 Male, age 75, left hemisphere 232.8
Substantia nigra
nTPM: 242.7
1916 Female, age 42, unknown 253.1
1889 Female, age 72, unknown 250.4
2241 Male, age 72, unknown 247.8
1851 Male, age 51, unknown 246.8
2590 Female, age 75, unknown 245.9
2409 Female, age 72, unknown 240.4
2699 Male, age 18, unknown 238.8
2665 Male, age 74, both hemispheres 237.8
1941 Male, age 53, unknown 234.9
2583 Male, age 75, right hemisphere 231.4
Superior colliculus
nTPM: 237.8
2587 Male, age 74, left hemisphere 252.0
1895 Male, age 76, right hemisphere 245.5
1913 Female, age 42, unknown 237.7
2261 Male, age 18, unknown 236.7
2668 Female, age 75, unknown 236.7
1796 Male, age 53, unknown 236.4
1839 Male, age 51, unknown 236.0
2087 Female, age 72, unknown 233.9
1995 Male, age 72, unknown 233.8
2664 Male, age 75, both hemispheres 229.7
Ventral tegmental area
nTPM: 242.4
2410 Female, age 72, unknown 249.9
1915 Female, age 42, unknown 243.2
2223 Female, age 72, unknown 242.9
2218 Male, age 76, both hemispheres 241.2
1942 Male, age 51, unknown 239.3
2021 Male, age 53, unknown 237.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 228.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 228.7
Samples: 139

Max nTPM: 529.9
Min nTPM: 120.9
Std nTPM: 64.1
Median nTPM: 217.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 529.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 479.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 402.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 374.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 367.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 354.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 348.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 332.6
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 323.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 318.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 317.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 198.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 198.9
FF:10158-103A5 76 years, female 198.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 31.0
Pig sample Sample description nTPM
Midbrain
nTPM: 28.3
Samples: 4

Max nTPM: 35.4
Min nTPM: 22.2
Sample A Female 26.5
Sample B Female 22.2
Sample C Male 35.4
Sample D Male 29.2
Periaqueductal gray
nTPM: 25.6
Samples: 3

Max nTPM: 31.8
Min nTPM: 21.9
Sample B Female 23.0
Sample C Male 31.8
Sample D Male 21.9
Substantia nigra
nTPM: 28.4
Samples: 4

Max nTPM: 41.7
Min nTPM: 14.8
Sample A Female 41.7
Sample B Female 25.9
Sample C Male 31.3
Sample D Male 14.8
Superior colliculi
nTPM: 31.1
Samples: 4

Max nTPM: 38.7
Min nTPM: 20.0
Sample A Female 35.0
Sample B Female 30.5
Sample C Male 38.7
Sample D Male 20.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 46.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 46.8
Samples: 4

Max nTPM: 51.4
Min nTPM: 42.7
Sample A Male 48.8
Sample B Male 42.7
Sample C Female 44.2
Sample D Female 51.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
75198184 Antisense, RP_060502_02_B05, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.