MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:54.0 nTPM
HPA:54.0 nTPM
GTEx:47.1 nTPM
FANTOM5:151.4 Scaled Tags Per Million
Pig:41.5 nTPM
Mouse:61.5 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 54.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.0
2828 Female, age 72, unknown 64.3
1870 Female, age 42, unknown 54.5
2586 Male, age 75, left hemisphere 51.1
2411 Female, age 72, unknown 50.6
1833 Male, age 53, unknown 50.1
1827 Male, age 72, unknown 47.4
1830 Male, age 51, unknown 47.0
2219 Male, age 76, both hemispheres 45.2
2666 Male, age 74, left hemisphere 45.1
2019 Male, age 18, unknown 44.5
Dorsal raphe nucleus
nTPM: 54.0
2016 Female, age 72, unknown 60.0
2750 Male, age 76, both hemispheres 54.9
1828 Male, age 53, unknown 54.0
2298 Female, age 72, unknown 51.8
2047 Male, age 72, unknown 49.4
Inferior colliculus
nTPM: 52.1
1848 Female, age 42, unknown 55.7
2097 Female, age 72, unknown 52.5
2849 Male, age 72, unknown 50.8
1890 Male, age 53, unknown 49.2
Median raphe nucleus
nTPM: 48.9
2220 Male, age 76, midline 48.9
Pedunculopontine tegmental nucleus
nTPM: 45.4
2334 Male, age 80, both hemispheres 50.6
1921 Female, age 85, both hemispheres 48.6
2338 Male, age 61, both hemispheres 37.1
Periaquaductal grey, anterior
nTPM: 48.4
2502 Female, age 75, unknown 51.2
1795 Male, age 51, unknown 47.4
1947 Male, age 18, unknown 46.7
Periaquaductal grey, dorsal
nTPM: 51.6
2464 Female, age 72, unknown 53.6
1840 Male, age 53, unknown 53.4
2850 Male, age 76, both hemispheres 52.6
1831 Male, age 72, unknown 46.9
Periaquaductal grey, lateral
nTPM: 50.2
2053 Male, age 18, unknown 57.7
2140 Male, age 76, both hemispheres 53.3
2272 Male, age 74, both hemispheres 39.6
Pretectal area
nTPM: 52.6
2667 Female, age 75, unknown 63.1
2316 Male, age 76, right hemisphere 58.6
2224 Female, age 72, unknown 55.5
1944 Female, age 72, unknown 54.5
1815 Male, age 53, unknown 54.3
1817 Female, age 42, unknown 53.3
1816 Male, age 51, unknown 50.2
2273 Male, age 74, both hemispheres 50.2
2825 Male, age 18, unknown 47.7
2007 Male, age 72, unknown 45.6
2407 Male, age 75, both hemispheres 45.3
Red nucleus
nTPM: 53.7
2503 Female, age 72, unknown 62.3
2227 Male, age 72, unknown 60.4
2769 Male, age 72, unknown 60.2
1904 Male, age 53, unknown 58.4
1821 Female, age 72, unknown 58.1
1954 Female, age 42, unknown 57.5
1865 Male, age 51, unknown 57.0
2823 Male, age 76, right hemisphere 55.6
2785 Male, age 18, unknown 46.7
2725 Female, age 75, unknown 45.0
2588 Male, age 74, left hemisphere 42.6
2584 Male, age 75, left hemisphere 40.0
Substantia nigra
nTPM: 50.6
2699 Male, age 18, unknown 63.7
1851 Male, age 51, unknown 58.1
1889 Female, age 72, unknown 54.5
1916 Female, age 42, unknown 54.5
2241 Male, age 72, unknown 49.4
2409 Female, age 72, unknown 48.3
2590 Female, age 75, unknown 47.3
2665 Male, age 74, both hemispheres 46.3
1941 Male, age 53, unknown 43.3
2583 Male, age 75, right hemisphere 40.9
Superior colliculus
nTPM: 53.6
1995 Male, age 72, unknown 62.3
1913 Female, age 42, unknown 57.6
2087 Female, age 72, unknown 55.0
1839 Male, age 51, unknown 53.3
2587 Male, age 74, left hemisphere 52.6
2668 Female, age 75, unknown 52.6
2261 Male, age 18, unknown 52.1
1796 Male, age 53, unknown 51.2
2664 Male, age 75, both hemispheres 50.5
1895 Male, age 76, right hemisphere 49.0
Ventral tegmental area
nTPM: 52.9
2410 Female, age 72, unknown 57.4
2021 Male, age 53, unknown 56.5
2223 Female, age 72, unknown 52.5
1915 Female, age 42, unknown 52.3
2218 Male, age 76, both hemispheres 51.0
1942 Male, age 51, unknown 47.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 47.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 47.1
Samples: 139

Max nTPM: 124.3
Min nTPM: 8.6
Std nTPM: 20.3
Median nTPM: 44.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 124.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 117.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 102.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 99.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 89.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 85.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 84.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 84.1
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 83.3
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 80.2
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 79.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 151.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 151.4
FF:10158-103A5 76 years, female 151.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 41.5
Pig sample Sample description nTPM
Midbrain
nTPM: 41.5
Samples: 4

Max nTPM: 49.6
Min nTPM: 31.4
Sample A Female 49.6
Sample B Female 45.9
Sample C Male 39.2
Sample D Male 31.4
Periaqueductal gray
nTPM: 37.8
Samples: 3

Max nTPM: 44.5
Min nTPM: 34.2
Sample B Female 44.5
Sample C Male 34.8
Sample D Male 34.2
Substantia nigra
nTPM: 41.2
Samples: 4

Max nTPM: 43.9
Min nTPM: 37.3
Sample A Female 41.6
Sample B Female 43.9
Sample C Male 37.3
Sample D Male 42.1
Superior colliculi
nTPM: 38.0
Samples: 4

Max nTPM: 41.5
Min nTPM: 35.7
Sample A Female 41.5
Sample B Female 36.0
Sample C Male 38.6
Sample D Male 35.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 61.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 61.5
Samples: 4

Max nTPM: 64.5
Min nTPM: 59.4
Sample A Male 61.6
Sample B Male 59.4
Sample C Female 64.5
Sample D Female 60.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
68445059 Antisense, RP_050111_02_F08, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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