MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:60.5 nTPM
HPA:60.5 nTPM
GTEx:29.8 nTPM
FANTOM5:204.6 Scaled Tags Per Million
Pig:50.3 nTPM
Mouse:44.9 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 60.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.6
2586 Male, age 75, left hemisphere 59.8
2828 Female, age 72, unknown 50.5
2666 Male, age 74, left hemisphere 49.2
1827 Male, age 72, unknown 42.9
1870 Female, age 42, unknown 34.7
1830 Male, age 51, unknown 31.3
2411 Female, age 72, unknown 28.0
1833 Male, age 53, unknown 26.0
2019 Male, age 18, unknown 24.3
2219 Male, age 76, both hemispheres 19.8
Dorsal raphe nucleus
nTPM: 39.4
2016 Female, age 72, unknown 49.8
2047 Male, age 72, unknown 41.0
1828 Male, age 53, unknown 38.5
2298 Female, age 72, unknown 34.8
2750 Male, age 76, both hemispheres 32.9
Inferior colliculus
nTPM: 39.0
1848 Female, age 42, unknown 43.3
2097 Female, age 72, unknown 41.9
1890 Male, age 53, unknown 35.4
2849 Male, age 72, unknown 35.2
Median raphe nucleus
nTPM: 29.3
2220 Male, age 76, midline 29.3
Pedunculopontine tegmental nucleus
nTPM: 29.6
2334 Male, age 80, both hemispheres 32.0
1921 Female, age 85, both hemispheres 28.6
2338 Male, age 61, both hemispheres 28.4
Periaquaductal grey, anterior
nTPM: 60.5
1947 Male, age 18, unknown 76.4
2502 Female, age 75, unknown 54.0
1795 Male, age 51, unknown 50.9
Periaquaductal grey, dorsal
nTPM: 50.2
1831 Male, age 72, unknown 65.0
1840 Male, age 53, unknown 47.9
2850 Male, age 76, both hemispheres 47.4
2464 Female, age 72, unknown 40.2
Periaquaductal grey, lateral
nTPM: 48.5
2053 Male, age 18, unknown 56.4
2140 Male, age 76, both hemispheres 46.4
2272 Male, age 74, both hemispheres 42.7
Pretectal area
nTPM: 42.5
2273 Male, age 74, both hemispheres 57.3
1944 Female, age 72, unknown 52.5
1816 Male, age 51, unknown 47.0
2407 Male, age 75, both hemispheres 46.4
2825 Male, age 18, unknown 43.3
2667 Female, age 75, unknown 42.2
1815 Male, age 53, unknown 40.6
1817 Female, age 42, unknown 37.4
2316 Male, age 76, right hemisphere 36.6
2224 Female, age 72, unknown 33.9
2007 Male, age 72, unknown 30.7
Red nucleus
nTPM: 32.7
2725 Female, age 75, unknown 46.1
2503 Female, age 72, unknown 39.5
2584 Male, age 75, left hemisphere 39.0
2823 Male, age 76, right hemisphere 37.0
1954 Female, age 42, unknown 35.0
1865 Male, age 51, unknown 31.2
1821 Female, age 72, unknown 30.4
2588 Male, age 74, left hemisphere 28.9
2227 Male, age 72, unknown 27.7
1904 Male, age 53, unknown 26.9
2769 Male, age 72, unknown 26.9
2785 Male, age 18, unknown 24.3
Substantia nigra
nTPM: 38.3
1941 Male, age 53, unknown 69.9
2583 Male, age 75, right hemisphere 47.7
1889 Female, age 72, unknown 37.6
2699 Male, age 18, unknown 36.9
2590 Female, age 75, unknown 33.3
2665 Male, age 74, both hemispheres 32.7
2241 Male, age 72, unknown 32.3
1916 Female, age 42, unknown 32.0
1851 Male, age 51, unknown 31.5
2409 Female, age 72, unknown 29.3
Superior colliculus
nTPM: 47.9
2664 Male, age 75, both hemispheres 67.7
1995 Male, age 72, unknown 63.6
2261 Male, age 18, unknown 54.5
1913 Female, age 42, unknown 50.0
2087 Female, age 72, unknown 49.4
2587 Male, age 74, left hemisphere 44.4
1839 Male, age 51, unknown 44.0
1796 Male, age 53, unknown 41.0
2668 Female, age 75, unknown 40.1
1895 Male, age 76, right hemisphere 24.7
Ventral tegmental area
nTPM: 35.1
1942 Male, age 51, unknown 51.4
2021 Male, age 53, unknown 38.3
1915 Female, age 42, unknown 33.2
2218 Male, age 76, both hemispheres 30.9
2410 Female, age 72, unknown 28.7
2223 Female, age 72, unknown 28.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 29.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.8
Samples: 139

Max nTPM: 78.3
Min nTPM: 8.7
Std nTPM: 11.5
Median nTPM: 27.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 78.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 65.4
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 61.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 59.4
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 56.7
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 55.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 51.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 49.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 49.2
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 46.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 45.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 204.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 204.6
FF:10158-103A5 76 years, female 204.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 50.3
Pig sample Sample description nTPM
Midbrain
nTPM: 50.3
Samples: 4

Max nTPM: 107.0
Min nTPM: 30.3
Sample A Female 31.6
Sample B Female 30.3
Sample C Male 107.0
Sample D Male 32.1
Periaqueductal gray
nTPM: 29.3
Samples: 3

Max nTPM: 32.9
Min nTPM: 25.7
Sample B Female 29.3
Sample C Male 32.9
Sample D Male 25.7
Substantia nigra
nTPM: 28.3
Samples: 4

Max nTPM: 33.8
Min nTPM: 20.8
Sample A Female 33.8
Sample B Female 28.7
Sample C Male 29.9
Sample D Male 20.8
Superior colliculi
nTPM: 45.8
Samples: 4

Max nTPM: 78.8
Min nTPM: 30.8
Sample A Female 33.6
Sample B Female 30.8
Sample C Male 78.8
Sample D Male 39.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 44.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 44.9
Samples: 4

Max nTPM: 50.8
Min nTPM: 40.6
Sample A Male 40.6
Sample B Male 44.7
Sample C Female 50.8
Sample D Female 43.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
73818756 Antisense, RP_050921_02_B08, Mouse strain C57BL/6J (56 days, male) 1.5
71763534 Antisense, RP_050921_02_B08, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.