MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:117.4 nTPM
HPA:117.4 nTPM
GTEx:69.4 nTPM
FANTOM5:131.2 Scaled Tags Per Million
Pig:49.9 nTPM
Mouse:95.5 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 117.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 106.5
2828 Female, age 72, unknown 109.4
2411 Female, age 72, unknown 108.8
1870 Female, age 42, unknown 107.0
2666 Male, age 74, left hemisphere 106.8
2019 Male, age 18, unknown 105.8
2219 Male, age 76, both hemispheres 105.8
1830 Male, age 51, unknown 105.6
1833 Male, age 53, unknown 105.5
2586 Male, age 75, left hemisphere 105.2
1827 Male, age 72, unknown 105.0
Dorsal raphe nucleus
nTPM: 113.7
2298 Female, age 72, unknown 118.6
2047 Male, age 72, unknown 116.0
1828 Male, age 53, unknown 113.0
2016 Female, age 72, unknown 112.1
2750 Male, age 76, both hemispheres 108.8
Inferior colliculus
nTPM: 111.2
2097 Female, age 72, unknown 115.9
1848 Female, age 42, unknown 111.4
1890 Male, age 53, unknown 110.2
2849 Male, age 72, unknown 107.3
Median raphe nucleus
nTPM: 114.2
2220 Male, age 76, midline 114.2
Pedunculopontine tegmental nucleus
nTPM: 111.5
2334 Male, age 80, both hemispheres 115.4
2338 Male, age 61, both hemispheres 110.5
1921 Female, age 85, both hemispheres 108.7
Periaquaductal grey, anterior
nTPM: 108.2
1795 Male, age 51, unknown 109.9
2502 Female, age 75, unknown 108.6
1947 Male, age 18, unknown 106.2
Periaquaductal grey, dorsal
nTPM: 109.9
2850 Male, age 76, both hemispheres 117.7
1840 Male, age 53, unknown 108.0
2464 Female, age 72, unknown 107.7
1831 Male, age 72, unknown 106.2
Periaquaductal grey, lateral
nTPM: 112.3
2272 Male, age 74, both hemispheres 118.1
2140 Male, age 76, both hemispheres 110.2
2053 Male, age 18, unknown 108.7
Pretectal area
nTPM: 108.9
2667 Female, age 75, unknown 118.3
2273 Male, age 74, both hemispheres 116.6
1944 Female, age 72, unknown 110.6
2825 Male, age 18, unknown 109.3
1816 Male, age 51, unknown 109.2
2224 Female, age 72, unknown 108.9
1817 Female, age 42, unknown 108.4
2007 Male, age 72, unknown 105.9
1815 Male, age 53, unknown 105.5
2316 Male, age 76, right hemisphere 103.3
2407 Male, age 75, both hemispheres 101.7
Red nucleus
nTPM: 111.4
1954 Female, age 42, unknown 118.9
1821 Female, age 72, unknown 115.5
2725 Female, age 75, unknown 115.5
2823 Male, age 76, right hemisphere 113.7
2769 Male, age 72, unknown 112.8
2503 Female, age 72, unknown 112.6
2227 Male, age 72, unknown 112.0
1904 Male, age 53, unknown 111.3
1865 Male, age 51, unknown 111.0
2588 Male, age 74, left hemisphere 106.2
2785 Male, age 18, unknown 105.5
2584 Male, age 75, left hemisphere 101.5
Substantia nigra
nTPM: 117.4
1916 Female, age 42, unknown 137.9
1941 Male, age 53, unknown 128.4
2699 Male, age 18, unknown 127.6
2241 Male, age 72, unknown 121.4
1851 Male, age 51, unknown 118.1
1889 Female, age 72, unknown 111.5
2409 Female, age 72, unknown 110.1
2665 Male, age 74, both hemispheres 108.1
2583 Male, age 75, right hemisphere 107.4
2590 Female, age 75, unknown 103.6
Superior colliculus
nTPM: 107.5
2087 Female, age 72, unknown 112.0
2261 Male, age 18, unknown 110.2
1995 Male, age 72, unknown 109.9
2587 Male, age 74, left hemisphere 108.9
1796 Male, age 53, unknown 108.3
1913 Female, age 42, unknown 107.1
2668 Female, age 75, unknown 106.6
1839 Male, age 51, unknown 105.8
2664 Male, age 75, both hemispheres 103.4
1895 Male, age 76, right hemisphere 102.7
Ventral tegmental area
nTPM: 114.5
1915 Female, age 42, unknown 120.5
2410 Female, age 72, unknown 117.8
2218 Male, age 76, both hemispheres 114.9
1942 Male, age 51, unknown 112.3
2021 Male, age 53, unknown 111.3
2223 Female, age 72, unknown 110.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 69.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 69.4
Samples: 139

Max nTPM: 115.3
Min nTPM: 31.6
Std nTPM: 17.2
Median nTPM: 68.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 115.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 110.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 108.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 107.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 105.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 98.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 96.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 95.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 95.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 94.0
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 93.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 131.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 131.2
FF:10158-103A5 76 years, female 131.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 49.9
Pig sample Sample description nTPM
Midbrain
nTPM: 48.9
Samples: 4

Max nTPM: 63.3
Min nTPM: 41.3
Sample A Female 63.3
Sample B Female 42.2
Sample C Male 48.6
Sample D Male 41.3
Periaqueductal gray
nTPM: 43.0
Samples: 3

Max nTPM: 49.2
Min nTPM: 39.4
Sample B Female 40.4
Sample C Male 49.2
Sample D Male 39.4
Substantia nigra
nTPM: 47.5
Samples: 4

Max nTPM: 58.2
Min nTPM: 42.0
Sample A Female 58.2
Sample B Female 42.0
Sample C Male 47.2
Sample D Male 42.4
Superior colliculi
nTPM: 49.9
Samples: 4

Max nTPM: 59.5
Min nTPM: 44.0
Sample A Female 59.5
Sample B Female 44.0
Sample C Male 49.7
Sample D Male 46.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 95.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 95.4
Samples: 4

Max nTPM: 106.3
Min nTPM: 86.6
Sample A Male 106.3
Sample B Male 86.6
Sample C Female 87.4
Sample D Female 101.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
75079788 Antisense, RP_060412_02_F08, Mouse strain C57BL/6J (56 days, male) 0.7
69133830 Antisense, RP_050321_02_D02, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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