BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:8.2 nTPM
HPA:8.2 nTPM
GTEx:13.1 nTPM
FANTOM5:3.1 Scaled Tags Per Million
Pig:1.3 nTPM
Mouse:6.9 nTPM
Allen mouse:5.7 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 8.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.0
1781 Male, age 74, unknown 0.0
1854 Male, age 80, left hemisphere 0.0
1857 Female, age 85, left hemisphere 0.0
2288 Male, age 75, left hemisphere 0.0
2289 Male, age 61, right hemisphere 0.0
2290 Female, age 72, unknown 0.0
2481 Female, age 94, left hemisphere 0.0
2846 Female, age 79, unknown 0.0
Claustrum
nTPM: 5.1
2284 Female, age 91, both hemispheres 13.0
2645 Female, age 72, unknown 12.4
2568 Male, age 61, both hemispheres 11.4
2491 Male, age 75, both hemispheres 9.2
2198 Male, age 80, both hemispheres 0.2
1956 Male, age 74, unknown 0.0
2196 Female, age 79, unknown 0.0
2292 Female, age 85, both hemispheres 0.0
2392 Female, age 94, both hemispheres 0.0
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 0.0
1783 Male, age 74, unknown 0.0
1806 Female, age 85, left hemisphere 0.0
1856 Female, age 91, right hemisphere 0.0
2286 Male, age 75, left hemisphere 0.0
2391 Female, age 94, left hemisphere 0.0
2698 Female, age 72, unknown 0.0
2732 Male, age 80, right hemisphere 0.0
2824 Male, age 61, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.0
2393 Male, age 80, right hemisphere 0.0
2484 Female, age 94, left hemisphere 0.0
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 1.5
2029 Male, age 61, right hemisphere 4.5
1979 Male, age 74, unknown 3.1
2775 Male, age 80, right hemisphere 0.1
1812 Female, age 91, both hemispheres 0.0
2195 Female, age 85, both hemispheres 0.0
Olfactory tubercle
nTPM: 8.2
2856 Male, age 75, right hemisphere 15.6
1998 Female, age 91, both hemispheres 10.2
2487 Female, age 94, left hemisphere 7.1
1846 Male, age 80, right hemisphere 0.0
Putamen
nTPM: 0.0
1829 Male, age 74, unknown 0.0
1838 Male, age 80, right hemisphere 0.0
1937 Female, age 91, right hemisphere 0.0
2466 Female, age 79, unknown 0.0
2482 Female, age 94, left hemisphere 0.0
2489 Female, age 72, unknown 0.0
2647 Male, age 75, left hemisphere 0.0
Septal nuclei
nTPM: 2.9
2199 Male, age 80, right hemisphere 12.8
2394 Male, age 61, left hemisphere 6.0
2629 Female, age 94, right hemisphere 1.3
1960 Male, age 74, unknown 0.0
2009 Female, age 91, both hemispheres 0.0
2031 Female, age 72, unknown 0.0
2059 Female, age 85, both hemispheres 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 13.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 10.4
Samples: 246

Max nTPM: 42.3
Min nTPM: 1.5
Std nTPM: 4.8
Median nTPM: 10.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 42.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 23.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 21.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 19.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 19.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 19.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 19.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 18.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 18.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 18.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 18.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 13.1
Samples: 246

Max nTPM: 49.7
Min nTPM: 0.9
Std nTPM: 6.8
Median nTPM: 12.7
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 49.7
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 37.3
GTEX-13G51-0011-R6b-SM-5LZX4 60-69 years, male 36.8
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 36.1
GTEX-15DYW-0011-R6b-SM-6PALA 60-69 years, female 35.2
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 32.9
GTEX-13SLX-0011-R6a-SM-5PNX4 50-59 years, female 32.4
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 31.8
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 27.3
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 27.2
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 26.7
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Brain - Putamen (basal ganglia)
Average nTPM: 10.5
Samples: 205

Max nTPM: 35.8
Min nTPM: 0.9
Std nTPM: 4.7
Median nTPM: 10.8
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 35.8
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 24.7
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 21.5
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 19.9
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 18.6
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 18.5
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 18.4
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 17.9
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 17.6
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 17.5
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 17.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 3.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2.9
FF:10164-103B2 76 years, female 2.9
Globus pallidus
Scaled Tags Per Million: 2.6
FF:10175-103C4 60 years, female 3.1
FF:10161-103A8 76 years, female 2.1
Nucleus accumbens
Scaled Tags Per Million: 2.9
FF:10037-101F1 23-56 years, mixed 2.9
Putamen
Scaled Tags Per Million: 3.1
FF:10176-103C5 60 years, female 3.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 1.3
Pig sample Sample description nTPM
Caudate
nTPM: 1.3
Samples: 4

Max nTPM: 1.6
Min nTPM: 0.9
Sample A Female 1.3
Sample B Female 1.3
Sample C Male 0.9
Sample D Male 1.6
Putamen
nTPM: 1.0
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.5
Sample A Female 1.1
Sample B Female 1.3
Sample C Male 0.5
Sample D Male 1.1
Septum
nTPM: 1.0
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.8
Sample A Female 0.8
Sample B Female 1.3
Sample C Male 1.0
Sample D Male 1.0
Ventral pallidum
nTPM: 1.3
Samples: 4

Max nTPM: 1.4
Min nTPM: 1.1
Sample A Female 1.4
Sample B Female 1.2
Sample C Male 1.1
Sample D Male 1.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 6.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 2.0
Samples: 4

Max nTPM: 3.9
Min nTPM: 0.6
Sample A Male 3.9
Sample B Male 2.4
Sample C Female 0.6
Sample D Female 0.9
Septum
nTPM: 6.9
Samples: 4

Max nTPM: 10.5
Min nTPM: 4.7
Sample A Male 10.5
Sample B Male 5.5
Sample C Female 6.8
Sample D Female 4.7
Ventral forebrain
nTPM: 5.7
Samples: 4

Max nTPM: 7.7
Min nTPM: 3.7
Sample A Male 7.7
Sample B Male 6.3
Sample C Female 5.2
Sample D Female 3.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.7
71495723 Antisense, RP_050913_03_E02, Mouse strain C57BL/6J (56 days, male) 2.7
73636153 Antisense, RP_050913_03_E02, Mouse strain C57BL/6J (56 days, male) 2.1
Pallidum
Expression energy: 5.7
73636153 Antisense, RP_050913_03_E02, Mouse strain C57BL/6J (56 days, male) 5.7
71495723 Antisense, RP_050913_03_E02, Mouse strain C57BL/6J (56 days, male) 5.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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