MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:37.5 nTPM
HPA:37.5 nTPM
GTEx:44.2 nTPM
FANTOM5:130.6 Scaled Tags Per Million
Pig:6.4 nTPM
Mouse:26.0 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.8
2411 Female, age 72, unknown 42.0
1870 Female, age 42, unknown 39.2
1830 Male, age 51, unknown 37.0
1833 Male, age 53, unknown 36.5
2019 Male, age 18, unknown 36.3
2586 Male, age 75, left hemisphere 36.0
1827 Male, age 72, unknown 33.9
2666 Male, age 74, left hemisphere 33.0
2219 Male, age 76, both hemispheres 32.0
2828 Female, age 72, unknown 31.8
Dorsal raphe nucleus
nTPM: 35.5
2016 Female, age 72, unknown 37.0
2047 Male, age 72, unknown 36.4
2750 Male, age 76, both hemispheres 35.8
2298 Female, age 72, unknown 34.3
1828 Male, age 53, unknown 34.1
Inferior colliculus
nTPM: 34.0
2097 Female, age 72, unknown 34.7
1848 Female, age 42, unknown 34.6
1890 Male, age 53, unknown 34.5
2849 Male, age 72, unknown 32.2
Median raphe nucleus
nTPM: 36.1
2220 Male, age 76, midline 36.1
Pedunculopontine tegmental nucleus
nTPM: 36.1
2334 Male, age 80, both hemispheres 36.9
1921 Female, age 85, both hemispheres 36.6
2338 Male, age 61, both hemispheres 34.9
Periaquaductal grey, anterior
nTPM: 35.6
1947 Male, age 18, unknown 37.2
2502 Female, age 75, unknown 36.0
1795 Male, age 51, unknown 33.4
Periaquaductal grey, dorsal
nTPM: 33.9
1840 Male, age 53, unknown 34.3
2464 Female, age 72, unknown 34.3
2850 Male, age 76, both hemispheres 34.2
1831 Male, age 72, unknown 32.6
Periaquaductal grey, lateral
nTPM: 32.9
2053 Male, age 18, unknown 36.9
2140 Male, age 76, both hemispheres 31.5
2272 Male, age 74, both hemispheres 30.4
Pretectal area
nTPM: 33.2
2224 Female, age 72, unknown 35.1
2007 Male, age 72, unknown 35.0
2825 Male, age 18, unknown 34.3
1815 Male, age 53, unknown 33.9
1944 Female, age 72, unknown 33.7
1817 Female, age 42, unknown 32.8
1816 Male, age 51, unknown 32.7
2316 Male, age 76, right hemisphere 32.5
2407 Male, age 75, both hemispheres 31.9
2273 Male, age 74, both hemispheres 31.8
2667 Female, age 75, unknown 31.6
Red nucleus
nTPM: 37.5
1821 Female, age 72, unknown 40.9
1954 Female, age 42, unknown 39.8
1904 Male, age 53, unknown 39.6
2503 Female, age 72, unknown 38.6
2584 Male, age 75, left hemisphere 38.0
2588 Male, age 74, left hemisphere 38.0
1865 Male, age 51, unknown 37.8
2725 Female, age 75, unknown 36.4
2769 Male, age 72, unknown 36.2
2227 Male, age 72, unknown 35.6
2823 Male, age 76, right hemisphere 35.2
2785 Male, age 18, unknown 34.0
Substantia nigra
nTPM: 36.3
2590 Female, age 75, unknown 39.5
2409 Female, age 72, unknown 39.2
2241 Male, age 72, unknown 38.4
1889 Female, age 72, unknown 37.3
2583 Male, age 75, right hemisphere 36.8
1851 Male, age 51, unknown 35.1
1916 Female, age 42, unknown 35.0
1941 Male, age 53, unknown 34.9
2665 Male, age 74, both hemispheres 34.2
2699 Male, age 18, unknown 32.8
Superior colliculus
nTPM: 34.7
2587 Male, age 74, left hemisphere 38.1
1995 Male, age 72, unknown 37.8
1913 Female, age 42, unknown 36.9
1839 Male, age 51, unknown 35.9
1895 Male, age 76, right hemisphere 34.7
2668 Female, age 75, unknown 34.0
2261 Male, age 18, unknown 33.7
1796 Male, age 53, unknown 32.2
2087 Female, age 72, unknown 32.0
2664 Male, age 75, both hemispheres 31.9
Ventral tegmental area
nTPM: 36.2
2410 Female, age 72, unknown 38.5
2223 Female, age 72, unknown 37.8
2021 Male, age 53, unknown 36.9
1942 Male, age 51, unknown 36.8
1915 Female, age 42, unknown 35.5
2218 Male, age 76, both hemispheres 31.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 44.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.2
Samples: 139

Max nTPM: 78.3
Min nTPM: 26.0
Std nTPM: 10.7
Median nTPM: 41.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 78.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 77.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 73.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 71.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 69.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 68.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 67.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 66.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 64.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 64.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 62.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 130.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 130.6
FF:10158-103A5 76 years, female 130.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 6.4
Pig sample Sample description nTPM
Midbrain
nTPM: 5.7
Samples: 4

Max nTPM: 6.8
Min nTPM: 4.6
Sample A Female 6.8
Sample B Female 5.9
Sample C Male 5.5
Sample D Male 4.6
Periaqueductal gray
nTPM: 5.4
Samples: 3

Max nTPM: 5.6
Min nTPM: 5.2
Sample B Female 5.2
Sample C Male 5.6
Sample D Male 5.3
Substantia nigra
nTPM: 5.9
Samples: 4

Max nTPM: 7.0
Min nTPM: 4.6
Sample A Female 7.0
Sample B Female 5.9
Sample C Male 5.9
Sample D Male 4.6
Superior colliculi
nTPM: 6.4
Samples: 4

Max nTPM: 8.8
Min nTPM: 4.9
Sample A Female 6.6
Sample B Female 8.8
Sample C Male 4.9
Sample D Male 5.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 26.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.0
Samples: 4

Max nTPM: 27.6
Min nTPM: 25.1
Sample A Male 25.1
Sample B Male 25.7
Sample C Female 27.6
Sample D Female 25.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
72129283 Antisense, RP_051017_03_F04, Mouse strain C57BL/6J (56 days, male) 1.8
69117014 Antisense, RP_050321_01_E12, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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