BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:41.9 nTPM
HPA:41.9 nTPM
GTEx:41.0 nTPM
FANTOM5:52.9 Scaled Tags Per Million
Pig:27.4 nTPM
Mouse:36.7 nTPM
Allen mouse:0.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA038339
Glial cells Medium
Neuronal cells Low


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 41.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 41.9
2288 Male, age 75, left hemisphere 43.1
1854 Male, age 80, left hemisphere 42.9
2846 Female, age 79, unknown 42.9
1857 Female, age 85, left hemisphere 42.7
2481 Female, age 94, left hemisphere 42.7
2290 Female, age 72, unknown 41.8
1781 Male, age 74, unknown 40.2
2289 Male, age 61, right hemisphere 39.4
Claustrum
nTPM: 40.6
2198 Male, age 80, both hemispheres 42.5
2196 Female, age 79, unknown 42.0
1956 Male, age 74, unknown 41.9
2392 Female, age 94, both hemispheres 40.6
2292 Female, age 85, both hemispheres 40.3
2645 Female, age 72, unknown 40.2
2284 Female, age 91, both hemispheres 39.8
2491 Male, age 75, both hemispheres 39.3
2568 Male, age 61, both hemispheres 38.9
Globus pallidus, externus
nTPM: 39.8
2772 Female, age 79, unknown 42.4
2395 Male, age 75, both hemispheres 40.9
1996 Male, age 80, right hemisphere 40.3
2646 Male, age 61, right hemisphere 38.4
2567 Female, age 72, unknown 36.9
Globus pallidus, internus
nTPM: 41.7
2287 Male, age 75, right hemisphere 44.2
2037 Male, age 80, right hemisphere 42.7
1818 Male, age 74, unknown 42.5
2483 Female, age 94, right hemisphere 42.0
2778 Female, age 91, both hemispheres 41.4
2111 Female, age 85, right hemisphere 40.3
2566 Female, age 72, unknown 38.6
Nucleus accumbens
nTPM: 41.8
2698 Female, age 72, unknown 45.2
2286 Male, age 75, left hemisphere 43.2
1783 Male, age 74, unknown 41.9
2391 Female, age 94, left hemisphere 41.6
1856 Female, age 91, right hemisphere 41.2
2824 Male, age 61, right hemisphere 41.2
1806 Female, age 85, left hemisphere 41.0
2732 Male, age 80, right hemisphere 39.3
Nucleus basalis of Meynert
nTPM: 41.0
2484 Female, age 94, left hemisphere 42.3
2393 Male, age 80, right hemisphere 41.3
2821 Male, age 75, both hemispheres 40.5
2569 Male, age 61, both hemispheres 39.9
Nucleus of the diagonal band
nTPM: 41.9
2775 Male, age 80, right hemisphere 44.6
1812 Female, age 91, both hemispheres 43.5
2195 Female, age 85, both hemispheres 42.3
1979 Male, age 74, unknown 41.1
2029 Male, age 61, right hemisphere 38.3
Olfactory tubercle
nTPM: 41.3
1846 Male, age 80, right hemisphere 44.0
1998 Female, age 91, both hemispheres 41.2
2487 Female, age 94, left hemisphere 40.2
2856 Male, age 75, right hemisphere 39.7
Putamen
nTPM: 41.7
2482 Female, age 94, left hemisphere 44.2
1937 Female, age 91, right hemisphere 41.8
1838 Male, age 80, right hemisphere 41.6
1829 Male, age 74, unknown 41.5
2466 Female, age 79, unknown 41.2
2489 Female, age 72, unknown 41.0
2647 Male, age 75, left hemisphere 40.2
Septal nuclei
nTPM: 41.5
2629 Female, age 94, right hemisphere 44.6
1960 Male, age 74, unknown 43.1
2009 Female, age 91, both hemispheres 41.6
2031 Female, age 72, unknown 41.1
2059 Female, age 85, both hemispheres 40.8
2394 Male, age 61, left hemisphere 40.1
2199 Male, age 80, right hemisphere 39.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 41.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 38.6
Samples: 246

Max nTPM: 76.7
Min nTPM: 22.6
Std nTPM: 9.1
Median nTPM: 37.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 76.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 76.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 75.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 67.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 66.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 65.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 64.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 60.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 59.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 58.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 56.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 39.8
Samples: 246

Max nTPM: 80.1
Min nTPM: 16.7
Std nTPM: 9.1
Median nTPM: 38.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 80.1
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 80.0
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 66.4
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 64.4
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 63.9
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 61.1
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 60.9
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 59.4
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 59.3
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 58.1
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 56.6
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Brain - Putamen (basal ganglia)
Average nTPM: 41.0
Samples: 205

Max nTPM: 77.6
Min nTPM: 23.7
Std nTPM: 9.1
Median nTPM: 39.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 77.6
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 70.3
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 65.4
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 64.6
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 63.9
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 63.1
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 60.4
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 60.4
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 60.2
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 59.8
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 59.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 46.3
FF:10164-103B2 76 years, female 46.3
Globus pallidus
Scaled Tags Per Million: 48.8
FF:10175-103C4 60 years, female 51.3
FF:10161-103A8 76 years, female 46.4
Nucleus accumbens
Scaled Tags Per Million: 43.5
FF:10037-101F1 23-56 years, mixed 43.5
Putamen
Scaled Tags Per Million: 52.9
FF:10176-103C5 60 years, female 52.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 27.4
Pig sample Sample description nTPM
Caudate
nTPM: 20.8
Samples: 4

Max nTPM: 22.0
Min nTPM: 20.3
Sample A Female 20.3
Sample B Female 20.7
Sample C Male 22.0
Sample D Male 20.3
Putamen
nTPM: 27.5
Samples: 4

Max nTPM: 30.3
Min nTPM: 23.9
Sample A Female 30.3
Sample B Female 23.9
Sample C Male 30.1
Sample D Male 25.5
Septum
nTPM: 24.4
Samples: 4

Max nTPM: 26.3
Min nTPM: 23.2
Sample A Female 23.8
Sample B Female 23.2
Sample C Male 24.2
Sample D Male 26.3
Ventral pallidum
nTPM: 24.8
Samples: 4

Max nTPM: 25.6
Min nTPM: 23.8
Sample A Female 23.8
Sample B Female 25.0
Sample C Male 25.6
Sample D Male 24.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 36.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 36.8
Samples: 4

Max nTPM: 41.4
Min nTPM: 34.2
Sample A Male 36.8
Sample B Male 41.4
Sample C Female 34.2
Sample D Female 34.6
Septum
nTPM: 28.6
Samples: 4

Max nTPM: 30.5
Min nTPM: 26.0
Sample A Male 26.0
Sample B Male 29.8
Sample C Female 30.5
Sample D Female 28.2
Ventral forebrain
nTPM: 31.4
Samples: 4

Max nTPM: 32.3
Min nTPM: 30.7
Sample A Male 32.3
Sample B Male 31.6
Sample C Female 30.7
Sample D Female 31.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
68522344 Antisense, RP_050118_01_H04, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.3
68522344 Antisense, RP_050118_01_H04, Mouse strain C57BL/6J (56 days, male) 0.3

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