MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:21.5 nTPM
HPA:21.5 nTPM
GTEx:1.7 nTPM
FANTOM5:0.1 Scaled Tags Per Million
Pig:7.3 nTPM
Mouse:1.7 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 21.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6.4
2019 Male, age 18, unknown 58.1
2828 Female, age 72, unknown 4.1
1827 Male, age 72, unknown 1.6
1833 Male, age 53, unknown 0.2
2586 Male, age 75, left hemisphere 0.2
1830 Male, age 51, unknown 0.1
1870 Female, age 42, unknown 0.0
2219 Male, age 76, both hemispheres 0.0
2411 Female, age 72, unknown 0.0
2666 Male, age 74, left hemisphere 0.0
Dorsal raphe nucleus
nTPM: 1.2
1828 Male, age 53, unknown 6.0
2016 Female, age 72, unknown 0.0
2047 Male, age 72, unknown 0.0
2298 Female, age 72, unknown 0.0
2750 Male, age 76, both hemispheres 0.0
Inferior colliculus
nTPM: 0.0
1848 Female, age 42, unknown 0.0
1890 Male, age 53, unknown 0.0
2097 Female, age 72, unknown 0.0
2849 Male, age 72, unknown 0.0
Median raphe nucleus
nTPM: 0.0
2220 Male, age 76, midline 0.0
Pedunculopontine tegmental nucleus
nTPM: 0.2
1921 Female, age 85, both hemispheres 0.6
2334 Male, age 80, both hemispheres 0.0
2338 Male, age 61, both hemispheres 0.0
Periaquaductal grey, anterior
nTPM: 0.3
1795 Male, age 51, unknown 0.9
1947 Male, age 18, unknown 0.0
2502 Female, age 75, unknown 0.0
Periaquaductal grey, dorsal
nTPM: 0.1
1831 Male, age 72, unknown 0.6
1840 Male, age 53, unknown 0.0
2464 Female, age 72, unknown 0.0
2850 Male, age 76, both hemispheres 0.0
Periaquaductal grey, lateral
nTPM: 0.0
2053 Male, age 18, unknown 0.0
2140 Male, age 76, both hemispheres 0.0
2272 Male, age 74, both hemispheres 0.0
Pretectal area
nTPM: 21.5
1817 Female, age 42, unknown 68.7
1815 Male, age 53, unknown 41.2
2007 Male, age 72, unknown 39.3
1816 Male, age 51, unknown 32.3
1944 Female, age 72, unknown 30.7
2667 Female, age 75, unknown 21.9
2273 Male, age 74, both hemispheres 1.5
2407 Male, age 75, both hemispheres 1.1
2316 Male, age 76, right hemisphere 0.4
2224 Female, age 72, unknown 0.0
2825 Male, age 18, unknown 0.0
Red nucleus
nTPM: 20.4
2785 Male, age 18, unknown 57.1
2823 Male, age 76, right hemisphere 30.1
2588 Male, age 74, left hemisphere 25.3
2503 Female, age 72, unknown 23.0
1821 Female, age 72, unknown 22.6
1954 Female, age 42, unknown 22.6
1904 Male, age 53, unknown 20.0
1865 Male, age 51, unknown 19.6
2769 Male, age 72, unknown 11.0
2227 Male, age 72, unknown 10.8
2725 Female, age 75, unknown 2.4
2584 Male, age 75, left hemisphere 0.4
Substantia nigra
nTPM: 3.2
1889 Female, age 72, unknown 30.1
2665 Male, age 74, both hemispheres 1.7
2583 Male, age 75, right hemisphere 0.7
1851 Male, age 51, unknown 0.0
1916 Female, age 42, unknown 0.0
1941 Male, age 53, unknown 0.0
2241 Male, age 72, unknown 0.0
2409 Female, age 72, unknown 0.0
2590 Female, age 75, unknown 0.0
2699 Male, age 18, unknown 0.0
Superior colliculus
nTPM: 5.2
2087 Female, age 72, unknown 23.6
1913 Female, age 42, unknown 9.2
1995 Male, age 72, unknown 6.8
2261 Male, age 18, unknown 4.1
1796 Male, age 53, unknown 3.9
2668 Female, age 75, unknown 3.4
2664 Male, age 75, both hemispheres 0.9
1839 Male, age 51, unknown 0.0
1895 Male, age 76, right hemisphere 0.0
2587 Male, age 74, left hemisphere 0.0
Ventral tegmental area
nTPM: 2.1
2410 Female, age 72, unknown 10.2
2218 Male, age 76, both hemispheres 2.6
1915 Female, age 42, unknown 0.0
1942 Male, age 51, unknown 0.0
2021 Male, age 53, unknown 0.0
2223 Female, age 72, unknown 0.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.7
Samples: 139

Max nTPM: 54.2
Min nTPM: 0.0
Std nTPM: 6.5
Median nTPM: 0.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 54.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 53.3
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 14.7
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 11.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 8.3
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 6.1
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 3.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 3.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 3.3
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 3.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 3.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.1
FF:10158-103A5 76 years, female 0.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.3
Pig sample Sample description nTPM
Midbrain
nTPM: 1.2
Samples: 4

Max nTPM: 3.6
Min nTPM: 0.3
Sample A Female 0.4
Sample B Female 0.4
Sample C Male 3.6
Sample D Male 0.3
Periaqueductal gray
nTPM: 0.2
Samples: 3

Max nTPM: 0.3
Min nTPM: 0.2
Sample B Female 0.3
Sample C Male 0.2
Sample D Male 0.2
Substantia nigra
nTPM: 0.3
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.2
Sample A Female 0.4
Sample B Female 0.2
Sample C Male 0.2
Sample D Male 0.3
Superior colliculi
nTPM: 7.3
Samples: 4

Max nTPM: 19.9
Min nTPM: 0.5
Sample A Female 0.5
Sample B Female 6.3
Sample C Male 19.9
Sample D Male 2.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.7
Samples: 4

Max nTPM: 1.9
Min nTPM: 1.3
Sample A Male 1.7
Sample B Male 1.9
Sample C Female 1.3
Sample D Female 1.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
75551480 Antisense, RP_060523_01_A02, Mouse strain C57BL/6J (56 days, male) 1.8
75551460 Antisense, RP_060523_01_A02, Mouse strain C57BL/6J (56 days, male) 0.7

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.