BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:85.3 nTPM
HPA:85.3 nTPM
GTEx:108.0 nTPM
FANTOM5:112.1 Scaled Tags Per Million
Pig:31.6 nTPM
Mouse:182.7 nTPM
Allen mouse:5.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 85.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 74.8
1857 Female, age 85, left hemisphere 79.9
1854 Male, age 80, left hemisphere 79.4
2846 Female, age 79, unknown 77.7
2288 Male, age 75, left hemisphere 77.1
1781 Male, age 74, unknown 75.6
2290 Female, age 72, unknown 75.3
2289 Male, age 61, right hemisphere 69.6
2481 Female, age 94, left hemisphere 63.9
Claustrum
nTPM: 77.6
2491 Male, age 75, both hemispheres 83.0
1956 Male, age 74, unknown 81.1
2198 Male, age 80, both hemispheres 79.0
2568 Male, age 61, both hemispheres 78.1
2292 Female, age 85, both hemispheres 77.3
2392 Female, age 94, both hemispheres 77.3
2196 Female, age 79, unknown 77.1
2284 Female, age 91, both hemispheres 74.8
2645 Female, age 72, unknown 71.1
Globus pallidus, externus
nTPM: 77.2
2567 Female, age 72, unknown 86.8
2646 Male, age 61, right hemisphere 78.9
2395 Male, age 75, both hemispheres 74.6
2772 Female, age 79, unknown 73.5
1996 Male, age 80, right hemisphere 72.3
Globus pallidus, internus
nTPM: 77.7
2566 Female, age 72, unknown 85.4
2287 Male, age 75, right hemisphere 84.9
2778 Female, age 91, both hemispheres 78.2
1818 Male, age 74, unknown 76.5
2111 Female, age 85, right hemisphere 76.5
2037 Male, age 80, right hemisphere 71.4
2483 Female, age 94, right hemisphere 71.3
Nucleus accumbens
nTPM: 80.0
2698 Female, age 72, unknown 87.7
1856 Female, age 91, right hemisphere 87.4
1806 Female, age 85, left hemisphere 84.5
1783 Male, age 74, unknown 83.4
2824 Male, age 61, right hemisphere 80.4
2286 Male, age 75, left hemisphere 73.2
2732 Male, age 80, right hemisphere 72.5
2391 Female, age 94, left hemisphere 70.6
Nucleus basalis of Meynert
nTPM: 74.0
2569 Male, age 61, both hemispheres 76.7
2393 Male, age 80, right hemisphere 76.6
2821 Male, age 75, both hemispheres 74.8
2484 Female, age 94, left hemisphere 68.1
Nucleus of the diagonal band
nTPM: 85.3
2195 Female, age 85, both hemispheres 91.8
2775 Male, age 80, right hemisphere 89.4
1812 Female, age 91, both hemispheres 87.2
2029 Male, age 61, right hemisphere 85.5
1979 Male, age 74, unknown 72.4
Olfactory tubercle
nTPM: 80.0
2487 Female, age 94, left hemisphere 85.3
1846 Male, age 80, right hemisphere 82.4
2856 Male, age 75, right hemisphere 77.9
1998 Female, age 91, both hemispheres 74.2
Putamen
nTPM: 76.7
1838 Male, age 80, right hemisphere 87.8
1829 Male, age 74, unknown 80.4
1937 Female, age 91, right hemisphere 79.1
2647 Male, age 75, left hemisphere 79.1
2489 Female, age 72, unknown 72.8
2466 Female, age 79, unknown 71.8
2482 Female, age 94, left hemisphere 65.7
Septal nuclei
nTPM: 78.3
1960 Male, age 74, unknown 92.9
2629 Female, age 94, right hemisphere 87.9
2031 Female, age 72, unknown 81.2
2009 Female, age 91, both hemispheres 80.3
2059 Female, age 85, both hemispheres 76.8
2394 Male, age 61, left hemisphere 64.4
2199 Male, age 80, right hemisphere 64.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 108.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 96.8
Samples: 246

Max nTPM: 155.3
Min nTPM: 68.2
Std nTPM: 15.9
Median nTPM: 95.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 155.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 149.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 143.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 140.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 139.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 138.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 138.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 137.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 135.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 132.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 127.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 108.0
Samples: 246

Max nTPM: 183.0
Min nTPM: 56.5
Std nTPM: 18.0
Median nTPM: 106.2
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 183.0
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 179.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 176.4
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 166.4
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 161.9
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 158.7
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 148.6
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 145.6
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 145.1
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 143.6
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 143.1
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Brain - Putamen (basal ganglia)
Average nTPM: 106.0
Samples: 205

Max nTPM: 191.9
Min nTPM: 61.1
Std nTPM: 17.6
Median nTPM: 104.0
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 191.9
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 176.1
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 154.5
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 153.3
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 151.0
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 145.9
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 144.9
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 139.3
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 139.0
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 136.9
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 134.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 112.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 98.6
FF:10164-103B2 76 years, female 98.6
Globus pallidus
Scaled Tags Per Million: 112.1
FF:10175-103C4 60 years, female 132.6
FF:10161-103A8 76 years, female 91.7
Nucleus accumbens
Scaled Tags Per Million: 78.2
FF:10037-101F1 23-56 years, mixed 78.2
Putamen
Scaled Tags Per Million: 99.3
FF:10176-103C5 60 years, female 99.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 31.6
Pig sample Sample description nTPM
Caudate
nTPM: 29.1
Samples: 4

Max nTPM: 31.9
Min nTPM: 25.4
Sample A Female 30.8
Sample B Female 25.4
Sample C Male 31.9
Sample D Male 28.1
Putamen
nTPM: 31.6
Samples: 4

Max nTPM: 43.4
Min nTPM: 23.9
Sample A Female 23.9
Sample B Female 29.5
Sample C Male 43.4
Sample D Male 29.4
Septum
nTPM: 25.9
Samples: 4

Max nTPM: 33.7
Min nTPM: 20.2
Sample A Female 33.7
Sample B Female 26.6
Sample C Male 22.9
Sample D Male 20.2
Ventral pallidum
nTPM: 28.3
Samples: 4

Max nTPM: 35.7
Min nTPM: 23.1
Sample A Female 35.7
Sample B Female 28.3
Sample C Male 23.1
Sample D Male 26.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 182.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 182.7
Samples: 4

Max nTPM: 223.7
Min nTPM: 166.9
Sample A Male 223.7
Sample B Male 166.9
Sample C Female 169.7
Sample D Female 170.3
Septum
nTPM: 137.1
Samples: 4

Max nTPM: 143.8
Min nTPM: 126.7
Sample A Male 135.2
Sample B Male 143.8
Sample C Female 142.6
Sample D Female 126.7
Ventral forebrain
nTPM: 159.5
Samples: 4

Max nTPM: 163.5
Min nTPM: 154.3
Sample A Male 163.5
Sample B Male 158.9
Sample C Female 154.3
Sample D Female 161.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.0
69838238 Antisense, RP_050224_02_D08, Mouse strain C57BL/6J (56 days, male) 5.0
Pallidum
Expression energy: 3.6
69838238 Antisense, RP_050224_02_D08, Mouse strain C57BL/6J (56 days, male) 3.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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