MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:23.6 nTPM
HPA:23.6 nTPM
GTEx:36.4 nTPM
FANTOM5:26.2 Scaled Tags Per Million
Pig:6.4 nTPM
Mouse:14.7 nTPM
Allen mouse:21.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 23.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.9
2411 Female, age 72, unknown 25.9
2586 Male, age 75, left hemisphere 25.8
1827 Male, age 72, unknown 22.9
1833 Male, age 53, unknown 22.7
1870 Female, age 42, unknown 22.5
2828 Female, age 72, unknown 22.5
2019 Male, age 18, unknown 22.4
2666 Male, age 74, left hemisphere 22.2
1830 Male, age 51, unknown 21.5
2219 Male, age 76, both hemispheres 20.3
Dorsal raphe nucleus
nTPM: 21.9
2750 Male, age 76, both hemispheres 23.4
1828 Male, age 53, unknown 22.0
2047 Male, age 72, unknown 22.0
2298 Female, age 72, unknown 21.7
2016 Female, age 72, unknown 20.2
Inferior colliculus
nTPM: 20.2
1890 Male, age 53, unknown 20.6
1848 Female, age 42, unknown 20.4
2097 Female, age 72, unknown 20.4
2849 Male, age 72, unknown 19.4
Median raphe nucleus
nTPM: 20.8
2220 Male, age 76, midline 20.8
Pedunculopontine tegmental nucleus
nTPM: 20.0
2334 Male, age 80, both hemispheres 21.1
1921 Female, age 85, both hemispheres 20.5
2338 Male, age 61, both hemispheres 18.4
Periaquaductal grey, anterior
nTPM: 22.1
2502 Female, age 75, unknown 22.6
1947 Male, age 18, unknown 21.9
1795 Male, age 51, unknown 21.8
Periaquaductal grey, dorsal
nTPM: 19.1
2464 Female, age 72, unknown 19.8
1840 Male, age 53, unknown 19.7
1831 Male, age 72, unknown 19.3
2850 Male, age 76, both hemispheres 17.9
Periaquaductal grey, lateral
nTPM: 19.3
2053 Male, age 18, unknown 20.0
2140 Male, age 76, both hemispheres 18.9
2272 Male, age 74, both hemispheres 18.9
Pretectal area
nTPM: 21.1
2007 Male, age 72, unknown 23.7
1817 Female, age 42, unknown 22.8
1944 Female, age 72, unknown 22.0
1816 Male, age 51, unknown 21.9
1815 Male, age 53, unknown 21.4
2407 Male, age 75, both hemispheres 21.1
2667 Female, age 75, unknown 20.4
2825 Male, age 18, unknown 20.3
2316 Male, age 76, right hemisphere 20.1
2273 Male, age 74, both hemispheres 19.6
2224 Female, age 72, unknown 19.4
Red nucleus
nTPM: 22.9
2227 Male, age 72, unknown 24.1
2503 Female, age 72, unknown 23.5
2584 Male, age 75, left hemisphere 23.5
2588 Male, age 74, left hemisphere 23.4
2769 Male, age 72, unknown 23.4
1904 Male, age 53, unknown 23.0
2823 Male, age 76, right hemisphere 23.0
1865 Male, age 51, unknown 22.9
2785 Male, age 18, unknown 22.8
1954 Female, age 42, unknown 22.3
1821 Female, age 72, unknown 22.2
2725 Female, age 75, unknown 21.2
Substantia nigra
nTPM: 23.1
1916 Female, age 42, unknown 25.5
1851 Male, age 51, unknown 24.5
2583 Male, age 75, right hemisphere 23.7
2699 Male, age 18, unknown 23.6
2665 Male, age 74, both hemispheres 23.5
1889 Female, age 72, unknown 23.3
2590 Female, age 75, unknown 22.9
2409 Female, age 72, unknown 22.4
1941 Male, age 53, unknown 21.2
2241 Male, age 72, unknown 20.1
Superior colliculus
nTPM: 21.6
2668 Female, age 75, unknown 23.7
1796 Male, age 53, unknown 22.7
2261 Male, age 18, unknown 21.7
1895 Male, age 76, right hemisphere 21.6
1839 Male, age 51, unknown 21.2
1913 Female, age 42, unknown 21.2
2587 Male, age 74, left hemisphere 21.1
1995 Male, age 72, unknown 21.0
2087 Female, age 72, unknown 20.9
2664 Male, age 75, both hemispheres 20.8
Ventral tegmental area
nTPM: 23.6
2410 Female, age 72, unknown 25.7
1915 Female, age 42, unknown 24.9
1942 Male, age 51, unknown 23.3
2223 Female, age 72, unknown 22.8
2021 Male, age 53, unknown 22.4
2218 Male, age 76, both hemispheres 22.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 36.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.4
Samples: 139

Max nTPM: 66.4
Min nTPM: 19.2
Std nTPM: 8.1
Median nTPM: 36.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 66.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 58.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 57.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 55.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 54.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 52.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 50.9
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 49.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 48.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 48.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 47.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.2
FF:10158-103A5 76 years, female 26.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 6.4
Pig sample Sample description nTPM
Midbrain
nTPM: 6.0
Samples: 4

Max nTPM: 7.9
Min nTPM: 5.0
Sample A Female 7.9
Sample B Female 5.2
Sample C Male 5.8
Sample D Male 5.0
Periaqueductal gray
nTPM: 4.5
Samples: 3

Max nTPM: 4.8
Min nTPM: 4.0
Sample B Female 4.8
Sample C Male 4.6
Sample D Male 4.0
Substantia nigra
nTPM: 6.5
Samples: 4

Max nTPM: 7.8
Min nTPM: 5.1
Sample A Female 6.8
Sample B Female 5.1
Sample C Male 6.1
Sample D Male 7.8
Superior colliculi
nTPM: 5.7
Samples: 4

Max nTPM: 6.4
Min nTPM: 4.3
Sample A Female 5.7
Sample B Female 4.3
Sample C Male 6.4
Sample D Male 6.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.7
Samples: 4

Max nTPM: 16.4
Min nTPM: 12.8
Sample A Male 16.4
Sample B Male 14.6
Sample C Female 12.8
Sample D Female 14.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 21.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 21.6
393220 Antisense, RP_040804_02_E11, Mouse strain C57BL/6J (56 days, male) 21.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.