BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:30.1 nTPM
HPA:30.1 nTPM
GTEx:54.3 nTPM
FANTOM5:143.7 Scaled Tags Per Million
Pig:52.4 nTPM
Mouse:88.9 nTPM
Allen mouse:13.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 30.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 10.5
2290 Female, age 72, unknown 28.3
2846 Female, age 79, unknown 21.1
1857 Female, age 85, left hemisphere 13.9
1781 Male, age 74, unknown 11.4
1854 Male, age 80, left hemisphere 5.3
2289 Male, age 61, right hemisphere 4.3
2288 Male, age 75, left hemisphere 0.0
2481 Female, age 94, left hemisphere 0.0
Claustrum
nTPM: 30.1
2645 Female, age 72, unknown 62.8
2568 Male, age 61, both hemispheres 41.5
2284 Female, age 91, both hemispheres 38.8
2198 Male, age 80, both hemispheres 32.3
2491 Male, age 75, both hemispheres 31.8
2196 Female, age 79, unknown 22.5
1956 Male, age 74, unknown 21.1
2392 Female, age 94, both hemispheres 10.3
2292 Female, age 85, both hemispheres 10.0
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 12.7
1783 Male, age 74, unknown 36.3
1856 Female, age 91, right hemisphere 22.9
2824 Male, age 61, right hemisphere 21.4
1806 Female, age 85, left hemisphere 16.8
2698 Female, age 72, unknown 4.3
2286 Male, age 75, left hemisphere 0.0
2391 Female, age 94, left hemisphere 0.0
2732 Male, age 80, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 2.5
2484 Female, age 94, left hemisphere 10.0
2393 Male, age 80, right hemisphere 0.0
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 23.8
2195 Female, age 85, both hemispheres 36.0
2029 Male, age 61, right hemisphere 30.7
2775 Male, age 80, right hemisphere 26.3
1812 Female, age 91, both hemispheres 21.1
1979 Male, age 74, unknown 4.7
Olfactory tubercle
nTPM: 25.0
2487 Female, age 94, left hemisphere 32.8
1998 Female, age 91, both hemispheres 31.1
2856 Male, age 75, right hemisphere 22.6
1846 Male, age 80, right hemisphere 13.6
Putamen
nTPM: 17.5
2466 Female, age 79, unknown 31.7
2489 Female, age 72, unknown 29.6
1829 Male, age 74, unknown 21.0
2647 Male, age 75, left hemisphere 16.3
1838 Male, age 80, right hemisphere 14.4
1937 Female, age 91, right hemisphere 9.9
2482 Female, age 94, left hemisphere 0.0
Septal nuclei
nTPM: 22.4
1960 Male, age 74, unknown 63.6
2059 Female, age 85, both hemispheres 30.6
2031 Female, age 72, unknown 28.1
2629 Female, age 94, right hemisphere 16.4
2009 Female, age 91, both hemispheres 15.0
2394 Male, age 61, left hemisphere 2.8
2199 Male, age 80, right hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 54.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 40.8
Samples: 246

Max nTPM: 110.0
Min nTPM: 9.2
Std nTPM: 20.0
Median nTPM: 37.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 110.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 100.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 98.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 93.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 88.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 87.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 85.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 82.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 81.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 80.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 78.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 54.3
Samples: 246

Max nTPM: 118.8
Min nTPM: 8.7
Std nTPM: 25.0
Median nTPM: 55.6
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 118.8
GTEX-13OVL-0011-R6a-SM-5L3G4 50-59 years, male 105.6
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 104.6
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 103.0
GTEX-13OW6-0011-R6b-SM-5L3GR 50-59 years, male 102.9
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 101.4
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 100.9
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 99.5
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 98.8
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 96.8
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 95.4
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Brain - Putamen (basal ganglia)
Average nTPM: 39.2
Samples: 205

Max nTPM: 100.9
Min nTPM: 11.7
Std nTPM: 18.5
Median nTPM: 36.4
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 100.9
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 96.6
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 82.5
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 81.7
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 78.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 78.1
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 76.8
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 76.4
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 76.1
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 74.3
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 73.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 143.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 91.2
FF:10164-103B2 76 years, female 91.2
Globus pallidus
Scaled Tags Per Million: 41.5
FF:10161-103A8 76 years, female 42.8
FF:10175-103C4 60 years, female 40.2
Nucleus accumbens
Scaled Tags Per Million: 143.7
FF:10037-101F1 23-56 years, mixed 143.7
Putamen
Scaled Tags Per Million: 112.0
FF:10176-103C5 60 years, female 112.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 52.4
Pig sample Sample description nTPM
Caudate
nTPM: 52.4
Samples: 4

Max nTPM: 65.0
Min nTPM: 40.2
Sample A Female 40.2
Sample B Female 57.6
Sample C Male 65.0
Sample D Male 46.9
Putamen
nTPM: 41.6
Samples: 4

Max nTPM: 50.4
Min nTPM: 22.9
Sample A Female 22.9
Sample B Female 43.2
Sample C Male 49.7
Sample D Male 50.4
Septum
nTPM: 29.2
Samples: 4

Max nTPM: 40.6
Min nTPM: 16.7
Sample A Female 40.6
Sample B Female 38.2
Sample C Male 21.4
Sample D Male 16.7
Ventral pallidum
nTPM: 40.0
Samples: 4

Max nTPM: 45.8
Min nTPM: 32.6
Sample A Female 45.8
Sample B Female 39.5
Sample C Male 32.6
Sample D Male 41.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 88.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 88.9
Samples: 4

Max nTPM: 111.9
Min nTPM: 70.8
Sample A Male 88.4
Sample B Male 111.9
Sample C Female 70.8
Sample D Female 84.6
Septum
nTPM: 61.8
Samples: 4

Max nTPM: 72.6
Min nTPM: 53.0
Sample A Male 72.6
Sample B Male 61.4
Sample C Female 60.2
Sample D Female 53.0
Ventral forebrain
nTPM: 83.0
Samples: 4

Max nTPM: 92.7
Min nTPM: 72.0
Sample A Male 89.0
Sample B Male 72.0
Sample C Female 92.7
Sample D Female 78.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 13.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 13.0
73584753 Antisense, RP_051206_01_A07, Mouse strain C57BL/6J (56 days, male) 13.0
Pallidum
Expression energy: 7.6
73584753 Antisense, RP_051206_01_A07, Mouse strain C57BL/6J (56 days, male) 7.6

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The Human Protein Atlas

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