BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:40.6 nTPM
HPA:40.6 nTPM
GTEx:39.2 nTPM
FANTOM5:132.9 Scaled Tags Per Million
Pig:32.7 nTPM
Mouse:14.6 nTPM
Allen mouse:0.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA027545Antibody CAB004851
Glial cells Not detectedLow
Neuronal cells MediumMedium





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 40.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 35.2
2846 Female, age 79, unknown 41.6
1857 Female, age 85, left hemisphere 40.6
2290 Female, age 72, unknown 39.8
1781 Male, age 74, unknown 38.7
2289 Male, age 61, right hemisphere 36.1
1854 Male, age 80, left hemisphere 32.3
2288 Male, age 75, left hemisphere 29.0
2481 Female, age 94, left hemisphere 23.6
Claustrum
nTPM: 34.6
2568 Male, age 61, both hemispheres 40.1
2284 Female, age 91, both hemispheres 38.5
2198 Male, age 80, both hemispheres 37.5
1956 Male, age 74, unknown 35.5
2645 Female, age 72, unknown 35.4
2491 Male, age 75, both hemispheres 33.6
2196 Female, age 79, unknown 32.5
2292 Female, age 85, both hemispheres 31.6
2392 Female, age 94, both hemispheres 26.9
Globus pallidus, externus
nTPM: 20.8
2772 Female, age 79, unknown 22.5
2395 Male, age 75, both hemispheres 22.4
2646 Male, age 61, right hemisphere 22.1
1996 Male, age 80, right hemisphere 21.5
2567 Female, age 72, unknown 15.4
Globus pallidus, internus
nTPM: 17.4
2483 Female, age 94, right hemisphere 21.7
2037 Male, age 80, right hemisphere 18.9
1818 Male, age 74, unknown 18.7
2287 Male, age 75, right hemisphere 18.6
2778 Female, age 91, both hemispheres 16.1
2566 Female, age 72, unknown 15.2
2111 Female, age 85, right hemisphere 12.7
Nucleus accumbens
nTPM: 32.1
1783 Male, age 74, unknown 41.2
1856 Female, age 91, right hemisphere 39.0
1806 Female, age 85, left hemisphere 36.9
2824 Male, age 61, right hemisphere 34.3
2698 Female, age 72, unknown 33.5
2286 Male, age 75, left hemisphere 29.9
2732 Male, age 80, right hemisphere 21.9
2391 Female, age 94, left hemisphere 20.1
Nucleus basalis of Meynert
nTPM: 28.7
2393 Male, age 80, right hemisphere 32.2
2821 Male, age 75, both hemispheres 29.3
2484 Female, age 94, left hemisphere 28.4
2569 Male, age 61, both hemispheres 24.9
Nucleus of the diagonal band
nTPM: 40.6
2195 Female, age 85, both hemispheres 49.6
1812 Female, age 91, both hemispheres 45.7
2775 Male, age 80, right hemisphere 44.1
2029 Male, age 61, right hemisphere 43.4
1979 Male, age 74, unknown 20.4
Olfactory tubercle
nTPM: 39.9
1998 Female, age 91, both hemispheres 44.3
1846 Male, age 80, right hemisphere 42.8
2856 Male, age 75, right hemisphere 36.6
2487 Female, age 94, left hemisphere 36.1
Putamen
nTPM: 34.6
1829 Male, age 74, unknown 42.2
2466 Female, age 79, unknown 41.9
1838 Male, age 80, right hemisphere 36.6
1937 Female, age 91, right hemisphere 34.1
2489 Female, age 72, unknown 32.4
2647 Male, age 75, left hemisphere 32.3
2482 Female, age 94, left hemisphere 23.0
Septal nuclei
nTPM: 35.9
1960 Male, age 74, unknown 50.8
2031 Female, age 72, unknown 44.7
2009 Female, age 91, both hemispheres 40.9
2629 Female, age 94, right hemisphere 38.7
2059 Female, age 85, both hemispheres 36.7
2199 Male, age 80, right hemisphere 21.2
2394 Male, age 61, left hemisphere 18.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 39.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 38.5
Samples: 246

Max nTPM: 68.3
Min nTPM: 16.8
Std nTPM: 10.6
Median nTPM: 38.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 68.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 67.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 65.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 65.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 63.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 62.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 60.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 60.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 59.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 59.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 59.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 39.2
Samples: 246

Max nTPM: 71.0
Min nTPM: 7.1
Std nTPM: 10.4
Median nTPM: 39.7
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 71.0
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 69.4
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 64.0
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 62.1
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 59.1
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 58.4
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 58.1
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 57.7
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 57.6
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 56.3
GTEX-1GN1U-0011-R6a-SM-CKZNO 50-59 years, female 56.1
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Brain - Putamen (basal ganglia)
Average nTPM: 36.1
Samples: 205

Max nTPM: 65.3
Min nTPM: 13.9
Std nTPM: 10.4
Median nTPM: 33.9
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 65.3
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 64.3
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 60.8
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 60.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 59.7
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 59.4
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 58.4
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 58.1
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 56.2
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 56.0
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 54.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 132.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 103.2
FF:10164-103B2 76 years, female 103.2
Globus pallidus
Scaled Tags Per Million: 59.1
FF:10161-103A8 76 years, female 59.9
FF:10175-103C4 60 years, female 58.4
Nucleus accumbens
Scaled Tags Per Million: 121.4
FF:10037-101F1 23-56 years, mixed 121.4
Putamen
Scaled Tags Per Million: 132.9
FF:10176-103C5 60 years, female 132.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 32.7
Pig sample Sample description nTPM
Caudate
nTPM: 32.7
Samples: 4

Max nTPM: 40.2
Min nTPM: 27.1
Sample A Female 27.1
Sample B Female 32.5
Sample C Male 40.2
Sample D Male 31.0
Putamen
nTPM: 30.4
Samples: 4

Max nTPM: 45.9
Min nTPM: 18.5
Sample A Female 18.5
Sample B Female 24.7
Sample C Male 45.9
Sample D Male 32.4
Septum
nTPM: 23.8
Samples: 4

Max nTPM: 28.8
Min nTPM: 20.4
Sample A Female 23.5
Sample B Female 20.4
Sample C Male 22.5
Sample D Male 28.8
Ventral pallidum
nTPM: 23.9
Samples: 4

Max nTPM: 27.3
Min nTPM: 22.2
Sample A Female 22.2
Sample B Female 27.3
Sample C Male 23.0
Sample D Male 23.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 14.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 13.8
Samples: 4

Max nTPM: 16.1
Min nTPM: 12.3
Sample A Male 16.1
Sample B Male 12.3
Sample C Female 13.1
Sample D Female 13.8
Septum
nTPM: 14.6
Samples: 4

Max nTPM: 18.0
Min nTPM: 11.0
Sample A Male 14.1
Sample B Male 15.1
Sample C Female 18.0
Sample D Female 11.0
Ventral forebrain
nTPM: 10.9
Samples: 4

Max nTPM: 12.3
Min nTPM: 8.4
Sample A Male 11.4
Sample B Male 8.4
Sample C Female 12.3
Sample D Female 11.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
77464938 Antisense, RP_070129_02_E05, Mouse strain C57BL/6J (56 days, male) 0.5
2029 Antisense, RP_Baylor_253874, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.2
2029 Antisense, RP_Baylor_253874, Mouse strain C57BL/6J (56 days, male) 0.2
77464938 Antisense, RP_070129_02_E05, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

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