BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:11.4 nTPM
HPA:11.4 nTPM
GTEx:8.8 nTPM
FANTOM5:32.6 Scaled Tags Per Million
Pig:16.0 nTPM
Mouse:46.1 nTPM
Allen mouse:5.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA010630Antibody HPA029058
Glial cells LowNot detected
Neuronal cells MediumLow





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 11.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 11.4
2846 Female, age 79, unknown 12.8
2288 Male, age 75, left hemisphere 11.7
2481 Female, age 94, left hemisphere 11.7
1857 Female, age 85, left hemisphere 11.3
2290 Female, age 72, unknown 11.3
1854 Male, age 80, left hemisphere 11.1
1781 Male, age 74, unknown 10.8
2289 Male, age 61, right hemisphere 10.2
Claustrum
nTPM: 10.6
2392 Female, age 94, both hemispheres 11.9
1956 Male, age 74, unknown 11.8
2491 Male, age 75, both hemispheres 10.6
2198 Male, age 80, both hemispheres 10.5
2292 Female, age 85, both hemispheres 10.4
2196 Female, age 79, unknown 10.3
2284 Female, age 91, both hemispheres 10.0
2568 Male, age 61, both hemispheres 10.0
2645 Female, age 72, unknown 9.9
Globus pallidus, externus
nTPM: 10.3
2395 Male, age 75, both hemispheres 11.7
2772 Female, age 79, unknown 11.3
1996 Male, age 80, right hemisphere 10.1
2646 Male, age 61, right hemisphere 9.5
2567 Female, age 72, unknown 9.0
Globus pallidus, internus
nTPM: 10.9
2287 Male, age 75, right hemisphere 12.7
2778 Female, age 91, both hemispheres 11.6
1818 Male, age 74, unknown 11.5
2483 Female, age 94, right hemisphere 11.4
2111 Female, age 85, right hemisphere 11.0
2037 Male, age 80, right hemisphere 10.7
2566 Female, age 72, unknown 7.4
Nucleus accumbens
nTPM: 11.2
2391 Female, age 94, left hemisphere 12.0
2286 Male, age 75, left hemisphere 11.9
2698 Female, age 72, unknown 11.5
1806 Female, age 85, left hemisphere 11.4
1856 Female, age 91, right hemisphere 11.3
1783 Male, age 74, unknown 10.8
2824 Male, age 61, right hemisphere 10.4
2732 Male, age 80, right hemisphere 10.2
Nucleus basalis of Meynert
nTPM: 10.7
2821 Male, age 75, both hemispheres 11.4
2393 Male, age 80, right hemisphere 11.2
2484 Female, age 94, left hemisphere 11.0
2569 Male, age 61, both hemispheres 9.4
Nucleus of the diagonal band
nTPM: 11.2
1812 Female, age 91, both hemispheres 11.7
2195 Female, age 85, both hemispheres 11.3
2775 Male, age 80, right hemisphere 11.2
1979 Male, age 74, unknown 11.0
2029 Male, age 61, right hemisphere 10.9
Olfactory tubercle
nTPM: 11.1
2856 Male, age 75, right hemisphere 11.4
1846 Male, age 80, right hemisphere 11.2
1998 Female, age 91, both hemispheres 11.2
2487 Female, age 94, left hemisphere 10.6
Putamen
nTPM: 10.6
2466 Female, age 79, unknown 11.9
1829 Male, age 74, unknown 11.3
1838 Male, age 80, right hemisphere 11.0
2482 Female, age 94, left hemisphere 11.0
2647 Male, age 75, left hemisphere 10.0
2489 Female, age 72, unknown 9.7
1937 Female, age 91, right hemisphere 9.6
Septal nuclei
nTPM: 11.0
2031 Female, age 72, unknown 13.5
1960 Male, age 74, unknown 11.2
2009 Female, age 91, both hemispheres 11.2
2199 Male, age 80, right hemisphere 10.8
2394 Male, age 61, left hemisphere 10.6
2629 Female, age 94, right hemisphere 10.1
2059 Female, age 85, both hemispheres 9.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 8.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 8.0
Samples: 246

Max nTPM: 21.6
Min nTPM: 0.4
Std nTPM: 3.1
Median nTPM: 8.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 21.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 16.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 15.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 14.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 13.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 13.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 13.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 13.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 13.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 12.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 12.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 7.8
Samples: 246

Max nTPM: 24.0
Min nTPM: 0.1
Std nTPM: 3.8
Median nTPM: 8.2
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 24.0
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 22.9
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 21.0
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 17.2
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 16.5
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 15.3
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 15.2
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 14.2
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 13.8
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 13.7
GTEX-1IY9M-0011-R6a-SM-D4P28 60-69 years, male 13.5
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Brain - Putamen (basal ganglia)
Average nTPM: 8.8
Samples: 205

Max nTPM: 20.2
Min nTPM: 0.7
Std nTPM: 3.4
Median nTPM: 9.0
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 20.2
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 17.7
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 17.0
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 16.7
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 16.5
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 15.9
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 15.3
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 15.2
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 15.1
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 14.9
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 14.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 22.5
FF:10164-103B2 76 years, female 22.5
Globus pallidus
Scaled Tags Per Million: 32.6
FF:10175-103C4 60 years, female 41.8
FF:10161-103A8 76 years, female 23.4
Nucleus accumbens
Scaled Tags Per Million: 23.5
FF:10037-101F1 23-56 years, mixed 23.5
Putamen
Scaled Tags Per Million: 25.1
FF:10176-103C5 60 years, female 25.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 16.0
Pig sample Sample description nTPM
Caudate
nTPM: 13.5
Samples: 4

Max nTPM: 14.5
Min nTPM: 11.8
Sample A Female 14.1
Sample B Female 11.8
Sample C Male 13.5
Sample D Male 14.5
Putamen
nTPM: 16.0
Samples: 4

Max nTPM: 19.5
Min nTPM: 14.4
Sample A Female 15.0
Sample B Female 15.1
Sample C Male 19.5
Sample D Male 14.4
Septum
nTPM: 14.2
Samples: 4

Max nTPM: 15.1
Min nTPM: 12.7
Sample A Female 14.5
Sample B Female 12.7
Sample C Male 14.5
Sample D Male 15.1
Ventral pallidum
nTPM: 14.7
Samples: 4

Max nTPM: 15.2
Min nTPM: 13.8
Sample A Female 15.2
Sample B Female 14.8
Sample C Male 13.8
Sample D Male 14.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 46.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 46.2
Samples: 4

Max nTPM: 51.0
Min nTPM: 40.8
Sample A Male 44.8
Sample B Male 40.8
Sample C Female 51.0
Sample D Female 48.0
Septum
nTPM: 45.7
Samples: 4

Max nTPM: 48.9
Min nTPM: 42.7
Sample A Male 42.7
Sample B Male 48.9
Sample C Female 46.7
Sample D Female 44.6
Ventral forebrain
nTPM: 42.3
Samples: 4

Max nTPM: 43.2
Min nTPM: 40.6
Sample A Male 43.1
Sample B Male 43.2
Sample C Female 42.3
Sample D Female 40.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.5
69059851 Antisense, RP_050317_04_C04, Mouse strain C57BL/6J (56 days, male) 4.5
Pallidum
Expression energy: 5.2
69059851 Antisense, RP_050317_04_C04, Mouse strain C57BL/6J (56 days, male) 5.2

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