BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:20.1 nTPM
HPA:20.1 nTPM
GTEx:10.7 nTPM
FANTOM5:22.6 Scaled Tags Per Million
Pig:9.8 nTPM
Mouse:44.8 nTPM
Allen mouse:1.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 20.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 15.7
1781 Male, age 74, unknown 17.6
2846 Female, age 79, unknown 16.9
2481 Female, age 94, left hemisphere 16.2
1857 Female, age 85, left hemisphere 15.8
1854 Male, age 80, left hemisphere 15.7
2288 Male, age 75, left hemisphere 15.5
2290 Female, age 72, unknown 15.5
2289 Male, age 61, right hemisphere 12.7
Claustrum
nTPM: 15.2
2392 Female, age 94, both hemispheres 17.6
1956 Male, age 74, unknown 16.0
2491 Male, age 75, both hemispheres 15.9
2568 Male, age 61, both hemispheres 15.5
2198 Male, age 80, both hemispheres 15.2
2645 Female, age 72, unknown 14.7
2196 Female, age 79, unknown 14.6
2292 Female, age 85, both hemispheres 14.0
2284 Female, age 91, both hemispheres 13.6
Globus pallidus, externus
nTPM: 13.5
2395 Male, age 75, both hemispheres 15.6
2772 Female, age 79, unknown 13.6
2567 Female, age 72, unknown 13.1
1996 Male, age 80, right hemisphere 12.6
2646 Male, age 61, right hemisphere 12.4
Globus pallidus, internus
nTPM: 13.5
2483 Female, age 94, right hemisphere 15.0
2287 Male, age 75, right hemisphere 14.7
2566 Female, age 72, unknown 13.2
2111 Female, age 85, right hemisphere 13.0
2778 Female, age 91, both hemispheres 13.0
1818 Male, age 74, unknown 12.9
2037 Male, age 80, right hemisphere 12.6
Nucleus accumbens
nTPM: 15.4
2391 Female, age 94, left hemisphere 17.0
1783 Male, age 74, unknown 16.6
2824 Male, age 61, right hemisphere 16.0
1806 Female, age 85, left hemisphere 15.4
2698 Female, age 72, unknown 15.2
2286 Male, age 75, left hemisphere 15.1
1856 Female, age 91, right hemisphere 14.9
2732 Male, age 80, right hemisphere 13.2
Nucleus basalis of Meynert
nTPM: 15.4
2484 Female, age 94, left hemisphere 17.8
2821 Male, age 75, both hemispheres 15.6
2393 Male, age 80, right hemisphere 15.0
2569 Male, age 61, both hemispheres 13.1
Nucleus of the diagonal band
nTPM: 20.1
1812 Female, age 91, both hemispheres 24.7
2029 Male, age 61, right hemisphere 20.9
2775 Male, age 80, right hemisphere 20.9
2195 Female, age 85, both hemispheres 19.8
1979 Male, age 74, unknown 14.1
Olfactory tubercle
nTPM: 18.7
1846 Male, age 80, right hemisphere 22.9
1998 Female, age 91, both hemispheres 19.5
2856 Male, age 75, right hemisphere 16.4
2487 Female, age 94, left hemisphere 16.2
Putamen
nTPM: 15.7
2466 Female, age 79, unknown 17.3
1838 Male, age 80, right hemisphere 17.0
2482 Female, age 94, left hemisphere 16.4
1829 Male, age 74, unknown 15.8
1937 Female, age 91, right hemisphere 14.5
2647 Male, age 75, left hemisphere 14.5
2489 Female, age 72, unknown 14.3
Septal nuclei
nTPM: 18.1
2031 Female, age 72, unknown 23.3
2009 Female, age 91, both hemispheres 21.6
1960 Male, age 74, unknown 20.5
2629 Female, age 94, right hemisphere 16.4
2059 Female, age 85, both hemispheres 15.3
2394 Male, age 61, left hemisphere 15.0
2199 Male, age 80, right hemisphere 14.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 10.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 10.2
Samples: 246

Max nTPM: 21.3
Min nTPM: 4.1
Std nTPM: 3.0
Median nTPM: 9.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 21.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 21.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 20.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 19.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 19.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 19.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 18.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 17.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 17.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 17.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 16.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 10.1
Samples: 246

Max nTPM: 37.3
Min nTPM: 3.2
Std nTPM: 3.1
Median nTPM: 10.0
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 37.3
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 19.5
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 17.7
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 16.7
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 16.4
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 16.3
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 15.8
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 15.5
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 15.5
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 15.4
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 15.3
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Brain - Putamen (basal ganglia)
Average nTPM: 10.7
Samples: 205

Max nTPM: 30.5
Min nTPM: 3.9
Std nTPM: 3.8
Median nTPM: 9.9
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 30.5
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 25.5
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 24.1
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 22.8
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 21.9
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 21.5
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 21.4
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 20.9
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 20.2
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 19.1
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 18.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 18.6
FF:10164-103B2 76 years, female 18.6
Globus pallidus
Scaled Tags Per Million: 14.3
FF:10161-103A8 76 years, female 18.4
FF:10175-103C4 60 years, female 10.2
Nucleus accumbens
Scaled Tags Per Million: 22.6
FF:10037-101F1 23-56 years, mixed 22.6
Putamen
Scaled Tags Per Million: 14.5
FF:10176-103C5 60 years, female 14.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 9.8
Pig sample Sample description nTPM
Caudate
nTPM: 6.7
Samples: 4

Max nTPM: 7.5
Min nTPM: 6.2
Sample A Female 7.5
Sample B Female 6.7
Sample C Male 6.3
Sample D Male 6.2
Putamen
nTPM: 5.1
Samples: 4

Max nTPM: 5.6
Min nTPM: 4.7
Sample A Female 4.9
Sample B Female 5.6
Sample C Male 5.1
Sample D Male 4.7
Septum
nTPM: 9.8
Samples: 4

Max nTPM: 14.5
Min nTPM: 6.4
Sample A Female 14.5
Sample B Female 10.4
Sample C Male 6.4
Sample D Male 7.8
Ventral pallidum
nTPM: 8.2
Samples: 4

Max nTPM: 13.9
Min nTPM: 5.3
Sample A Female 13.9
Sample B Female 6.7
Sample C Male 5.3
Sample D Male 6.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 44.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 34.1
Samples: 4

Max nTPM: 38.8
Min nTPM: 30.1
Sample A Male 36.2
Sample B Male 31.3
Sample C Female 30.1
Sample D Female 38.8
Septum
nTPM: 44.8
Samples: 4

Max nTPM: 50.5
Min nTPM: 39.0
Sample A Male 39.0
Sample B Male 50.5
Sample C Female 47.1
Sample D Female 42.6
Ventral forebrain
nTPM: 35.6
Samples: 4

Max nTPM: 38.2
Min nTPM: 31.5
Sample A Male 36.7
Sample B Male 31.5
Sample C Female 38.2
Sample D Female 35.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.2
100144398 Antisense, RP_110407_01_H03, Mouse strain C57BL/6J (56 days, male) 1.2
Pallidum
Expression energy: 0.8
100144398 Antisense, RP_110407_01_H03, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

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